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Protein
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Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
lsrF and lsrG are separated by 23 nucleotides
lsrG and tam are separated by 56 nucleotides
tam and yneE are separated by 3 nucleotides
yneE and uxaB are separated by 196 nucleotides
MCAODC_16775: lsrF - 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase, at 267,596 to 268,471
lsrF
MCAODC_16780: lsrG - (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase, at 268,495 to 268,785
lsrG
MCAODC_16785: tam - trans-aconitate 2-methyltransferase, at 268,842 to 269,600
tam
MCAODC_16790: yneE - UPF0187 protein YneE, at 269,604 to 270,518
yneE
MCAODC_16795: uxaB - tagaturonate reductase, at 270,715 to 272,166
uxaB
Group
Condition
MCAODC
_16775
MCAODC
_16780
MCAODC
_16785
MCAODC
_16790
MCAODC
_16795
lsrF
lsrG
tam
yneE
uxaB
carbon source
Sodium-DL-Lactate
-2.3
N.D.
-0.1
+0.4
-0.3
phage
WM_Bas41
-1.0
N.D.
-0.8
+0.2
-0.6
carbon source
D-Glucose
-0.6
N.D.
-0.4
-1.0
-0.1
phage
TP9
-0.1
N.D.
-0.7
+0.1
-0.6
carbon source
Sodium-DL-Lactate
-0.5
N.D.
-0.5
+0.4
+0.2
phage
Bas09
+0.2
N.D.
-0.2
+0.5
-0.9
carbon source
L-Arabinose
-0.1
N.D.
-0.4
+0.2
+0.0
carbon source
D-Glucose
-1.1
N.D.
+0.3
+0.4
+0.2
phage
EV240
-0.9
N.D.
-0.0
+0.7
+0.1
carbon source
Casamino-acids
-0.3
N.D.
-0.2
+0.1
+0.3
carbon source
L-Arabinose
-0.3
N.D.
+0.0
+0.3
-0.1
phage
WM_TP9
+0.3
N.D.
-0.2
+0.5
-0.4
phage
Bas14
-0.1
N.D.
+0.0
+0.7
-0.5
phage
WM_EV240
+0.2
N.D.
-0.5
+0.1
+0.4
phage
WM_Bas09
+0.1
N.D.
+0.3
-0.3
+0.2
no phage control
Control_ECRC101_WM
+0.4
N.D.
-0.2
+0.1
+0.1
phage
WM_RB68
+0.3
N.D.
+0.2
+0.3
-0.5
phage
WM_EV240
-0.6
N.D.
-0.2
+0.8
+0.4
carbon source
Casamino-acids
-0.2
N.D.
+0.5
+0.4
-0.2
phage
WM_Bas09
+0.6
N.D.
-0.2
-0.2
+0.4
phage
Bas09
+0.3
N.D.
-0.1
+0.6
-0.0
phage
WM_Bas14
+0.4
N.D.
+0.2
-0.2
+0.4
phage
Bas14
-0.7
N.D.
-0.1
+1.5
+0.1
phage
WM_TP9
+0.3
N.D.
+0.3
+0.6
+0.2
phage
EV240
+0.3
N.D.
-0.0
+0.9
+0.2
no phage control
Control_ECRC101_WM
+0.3
N.D.
+0.5
+0.3
+0.3
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