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Protein
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Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
gadB and pqqL are separated by 360 nucleotides
pqqL and yddB are separated by 56 nucleotides
yddB and yddA are separated by 37 nucleotides
yddA and ydeM are separated by 317 nucleotides
MCAODC_16655: gadB - glutamate decarboxylase, at 229,464 to 230,864
gadB
MCAODC_16660: pqqL - putative zinc protease PqqL, at 231,225 to 234,008
pqqL
MCAODC_16665: yddB - Uncharacterized protein YddB, at 234,065 to 236,437
yddB
MCAODC_16670: yddA - Inner membrane ABC transporter ATP-binding protein YddA, at 236,475 to 238,133
yddA
MCAODC_16675: ydeM - anaerobic sulfatase maturase, at 238,451 to 239,608
ydeM
Group
Condition
MCAODC
_16655
MCAODC
_16660
MCAODC
_16665
MCAODC
_16670
MCAODC
_16675
gadB
pqqL
yddB
yddA
ydeM
carbon source
L-Arabinose
-0.3
-0.4
-0.1
-0.3
-3.8
carbon source
Casamino-acids
-0.7
+0.1
-0.0
+0.2
-3.9
phage
WM_Bas09
-0.0
-0.0
+0.0
-0.4
-2.4
phage
WM_Bas41
+0.4
-0.1
+0.1
-0.3
-2.6
phage
EV240
-0.0
+0.1
-0.0
-0.0
-2.1
carbon source
Sodium-DL-Lactate
+0.5
-0.2
+0.1
+0.7
-2.7
carbon source
D-Glucose
+0.0
+0.0
-0.0
+0.5
-1.8
carbon source
Casamino-acids
-0.5
+0.1
+0.0
+0.3
-1.2
phage
Bas14
+1.1
-0.5
-0.1
+0.5
-2.0
carbon source
L-Arabinose
-0.1
-0.5
+0.1
-0.4
+0.1
phage
EV240
+0.6
+0.1
+0.2
+0.3
-2.0
phage
Bas14
-0.6
+0.3
-0.1
+1.2
-1.3
phage
WM_EV240
+0.4
+0.0
+0.1
-0.7
-0.1
phage
WM_TP9
-0.0
+0.0
+0.0
+0.3
-0.6
phage
WM_RB68
+0.1
-0.1
-0.0
+0.2
-0.5
phage
WM_TP9
-0.1
-0.1
-0.0
+0.6
-0.7
phage
TP9
+1.0
+0.3
-0.6
+0.2
-1.1
no phage control
Control_ECRC101_WM
+0.2
-0.3
+0.0
-0.0
+0.1
carbon source
D-Glucose
+0.3
+0.1
+0.0
+0.1
+0.0
phage
Bas09
+0.5
+0.4
+0.1
+0.1
-0.7
phage
WM_EV240
-0.4
-0.5
+0.3
+0.1
+1.0
phage
WM_Bas14
+0.0
-0.2
+0.2
+0.6
+0.0
carbon source
Sodium-DL-Lactate
+0.4
-0.2
-0.2
+0.7
-0.2
phage
Bas09
+1.3
+0.3
-0.2
+0.3
-0.5
phage
WM_Bas09
+0.6
+0.1
+0.0
-0.0
+0.7
no phage control
Control_ECRC101_WM
+0.5
+0.0
+0.1
+0.3
+1.9
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