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Protein
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Fitness for 5 genes in
Escherichia coli ECRC101
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500 nt
MCAODC_16265 and trg are separated by 340 nucleotides
trg and ydcI are separated by 37 nucleotides
ydcI and ydcJ are separated by 216 nucleotides
ydcJ and opgD are separated by 260 nucleotides
MCAODC_16265: MCAODC_16265 - Regulatory protein mokB, at 147,034 to 147,201
_16265
MCAODC_16275: trg - methyl-accepting chemotaxis protein Trg, at 147,542 to 149,182
trg
MCAODC_16280: ydcI - Uncharacterized HTH-type transcriptional regulator YdcI, at 149,220 to 150,143
ydcI
MCAODC_16285: ydcJ - Uncharacterized protein YdcJ, at 150,360 to 151,703
ydcJ
MCAODC_16290: opgD - glucan biosynthesis protein OpgD, at 151,964 to 153,583
opgD
Group
Condition
MCAODC
_16265
MCAODC
_16275
MCAODC
_16280
MCAODC
_16285
MCAODC
_16290
trg
ydcI
ydcJ
opgD
phage
Bas14
+0.8
-0.4
+0.4
-0.5
-1.7
carbon source
D-Glucose
-1.0
+0.0
+0.1
-0.0
-0.1
carbon source
Sodium-DL-Lactate
-1.1
-0.5
+0.6
-0.1
+0.1
carbon source
Sodium-DL-Lactate
-1.0
-0.1
+0.3
-0.2
+0.2
phage
WM_EV240
-2.5
+0.5
+0.5
+0.3
+0.6
phage
EV240
+0.6
-0.1
-0.8
-0.3
+0.0
carbon source
Casamino-acids
-1.1
-0.3
+0.8
-0.2
+0.3
phage
Bas09
-0.6
+0.0
+0.3
+0.2
-0.4
carbon source
L-Arabinose
-0.6
-0.2
+0.2
+0.2
+0.1
phage
WM_Bas41
-0.4
+0.1
-0.1
-0.2
+0.3
carbon source
D-Glucose
+0.1
-0.2
-0.2
+0.0
+0.2
phage
Bas14
-0.1
-0.3
+1.0
-0.2
-0.5
phage
WM_TP9
-0.1
-0.1
+0.1
+0.2
-0.0
phage
EV240
+0.3
-0.1
+0.1
-0.3
+0.2
carbon source
Casamino-acids
-0.3
+0.1
+0.4
+0.0
+0.0
phage
Bas09
+0.9
-0.5
+0.3
+0.2
-0.3
phage
WM_RB68
-0.1
-0.1
+0.4
+0.2
+0.2
no phage control
Control_ECRC101_WM
+0.2
-0.3
+0.4
+0.0
+0.3
carbon source
L-Arabinose
+0.3
-0.0
+0.6
-0.3
+0.2
phage
WM_TP9
-0.1
+0.2
-0.1
+0.7
+0.1
phage
WM_EV240
-1.5
+0.1
+0.9
+0.8
+0.6
phage
WM_Bas14
+0.7
+0.1
+0.1
-0.0
+0.2
phage
WM_Bas09
-0.1
+0.3
+0.3
+0.5
+0.2
no phage control
Control_ECRC101_WM
-0.6
+0.2
+0.6
+0.8
+0.3
phage
TP9
+1.6
+0.1
+0.5
-0.3
-0.2
phage
WM_Bas09
+0.4
+0.4
+0.6
+0.3
+0.3
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