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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
ynbD and azoR are separated by 50 nucleotides
azoR and hrpA are separated by 200 nucleotides
hrpA and MCAODC_16210 are separated by 145 nucleotides
MCAODC_16210 and MCAODC_16215 are separated by 4 nucleotides
MCAODC_16195: ynbD - Uncharacterized protein YnbD, at 134,281 to 135,597
ynbD
MCAODC_16200: azoR - FMN-dependent NADH-azoreductase, at 135,648 to 136,253
azoR
MCAODC_16205: hrpA - ATP-dependent RNA helicase HrpA, at 136,454 to 140,356
hrpA
MCAODC_16210: MCAODC_16210 - hypothetical protein, at 140,502 to 140,927
_16210
MCAODC_16215: MCAODC_16215 - hypothetical protein, at 140,932 to 141,270
_16215
Group
Condition
MCAODC
_16195
MCAODC
_16200
MCAODC
_16205
MCAODC
_16210
MCAODC
_16215
ynbD
azoR
hrpA
phage
Bas14
-0.4
-0.2
-0.6
N.D.
N.D.
phage
EV240
-0.5
-0.6
-0.0
N.D.
N.D.
carbon source
D-Glucose
-0.1
-1.0
-0.0
N.D.
N.D.
no phage control
Control_ECRC101_WM
-0.1
-0.7
-0.1
N.D.
N.D.
carbon source
L-Arabinose
-0.5
-0.2
-0.1
N.D.
N.D.
phage
WM_EV240
+0.1
+0.1
-0.9
N.D.
N.D.
carbon source
Casamino-acids
-0.2
-0.2
-0.3
N.D.
N.D.
phage
Bas09
-0.0
-0.4
-0.2
N.D.
N.D.
carbon source
Casamino-acids
-0.1
+0.0
-0.1
N.D.
N.D.
no phage control
Control_ECRC101_WM
+0.2
-0.4
-0.0
N.D.
N.D.
phage
WM_Bas14
+0.1
-0.3
-0.0
N.D.
N.D.
phage
WM_Bas09
+0.1
-0.0
-0.2
N.D.
N.D.
carbon source
Sodium-DL-Lactate
-0.0
-0.0
-0.1
N.D.
N.D.
phage
WM_TP9
+0.1
+0.2
-0.4
N.D.
N.D.
phage
WM_RB68
-0.2
-0.0
+0.0
N.D.
N.D.
carbon source
Sodium-DL-Lactate
-0.2
+0.1
-0.0
N.D.
N.D.
phage
Bas09
+0.0
+0.1
-0.2
N.D.
N.D.
carbon source
L-Arabinose
-0.1
+0.1
-0.1
N.D.
N.D.
phage
WM_Bas41
-0.0
-0.0
-0.0
N.D.
N.D.
phage
EV240
-0.1
+0.0
+0.1
N.D.
N.D.
phage
Bas14
+0.2
-0.2
+0.2
N.D.
N.D.
carbon source
D-Glucose
-0.2
+0.2
+0.2
N.D.
N.D.
phage
WM_Bas09
+0.3
+0.3
-0.3
N.D.
N.D.
phage
WM_EV240
-0.0
+0.3
+0.1
N.D.
N.D.
phage
WM_TP9
+0.4
-0.2
+0.2
N.D.
N.D.
phage
TP9
-0.1
+0.2
+0.6
N.D.
N.D.
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