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Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
psuG and psuT are separated by 93 nucleotides
psuT and yeiL are separated by 70 nucleotides
yeiL and rihB are separated by 129 nucleotides
rihB and nupX are separated by 99 nucleotides
MCAODC_14505: psuG - pseudouridine-5'-phosphate glycosidase, at 2,854,425 to 2,855,363
psuG
MCAODC_14510: psuT - Putative pseudouridine transporter, at 2,855,457 to 2,856,707
psuT
MCAODC_14515: yeiL - Regulatory protein YeiL, at 2,856,778 to 2,857,476
yeiL
MCAODC_14520: rihB - ribosylpyrimidine nucleosidase, at 2,857,606 to 2,858,547
rihB
MCAODC_14525: nupX - Putative nucleoside permease NupX, at 2,858,647 to 2,859,897
nupX
Group
Condition
MCAODC
_14505
MCAODC
_14510
MCAODC
_14515
MCAODC
_14520
MCAODC
_14525
psuG
psuT
yeiL
rihB
nupX
carbon source
L-Arabinose
-1.5
-0.1
-1.2
+0.1
+0.1
phage
Bas09
-0.3
+0.1
-2.1
+0.1
-0.3
phage
WM_Bas41
+0.2
-0.1
-1.9
-0.1
+0.2
phage
Bas14
-0.9
-0.1
-0.7
-0.2
+0.3
phage
EV240
+0.3
-0.7
-1.3
+0.3
-0.2
phage
WM_EV240
-0.3
-0.5
+0.2
-0.5
-0.2
phage
EV240
+0.0
-0.0
-2.1
+0.5
+0.3
carbon source
Sodium-DL-Lactate
-0.3
+0.1
-0.6
-0.5
-0.0
phage
WM_TP9
-0.4
+0.1
-1.1
+0.4
-0.1
phage
WM_Bas09
-0.2
+0.2
-0.9
-0.1
+0.2
carbon source
D-Glucose
-0.3
-0.2
-0.2
-0.2
+0.1
phage
WM_Bas09
-0.6
+0.3
-0.1
-0.1
-0.1
phage
WM_EV240
-0.7
-0.0
+0.6
-0.1
-0.3
carbon source
L-Arabinose
+0.1
-0.2
-0.1
-0.2
-0.1
phage
TP9
+0.2
-0.1
-0.4
+0.1
-0.1
phage
Bas14
-0.5
-0.2
+0.1
+0.2
+0.3
carbon source
D-Glucose
+0.7
+0.2
-0.4
-0.3
+0.0
phage
WM_RB68
+0.3
+0.0
-0.3
+0.3
-0.1
phage
WM_TP9
+0.6
-0.3
-0.2
+0.1
+0.2
no phage control
Control_ECRC101_WM
-0.1
+0.3
+0.1
+0.1
+0.1
carbon source
Casamino-acids
+0.4
-0.3
+0.4
-0.1
+0.1
carbon source
Casamino-acids
+0.2
-0.0
-0.0
+0.3
+0.1
phage
Bas09
-0.2
+0.1
+0.5
+0.2
+0.2
no phage control
Control_ECRC101_WM
+0.2
+0.7
-0.4
+0.1
+0.4
carbon source
Sodium-DL-Lactate
+0.6
-0.1
+0.2
+0.2
+0.3
phage
WM_Bas14
+0.6
+0.3
+0.8
+0.2
-0.1
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