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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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500 nt
yfaE and nrdB overlap by 1 nucleotides
nrdB and yoaM overlap by 2 nucleotides
yoaM and nrdA are separated by 192 nucleotides
nrdA and yfaL are separated by 695 nucleotides
MCAODC_14150: yfaE - ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE, at 2,773,176 to 2,773,430
yfaE
MCAODC_14155: nrdB - ribonucleotide-diphosphate reductase subunit beta, at 2,773,430 to 2,774,560
nrdB
MCAODC_14160: yoaM - Protein YoaM, at 2,774,559 to 2,774,594
yoaM
MCAODC_14170: nrdA - ribonucleoside-diphosphate reductase subunit alpha, at 2,774,787 to 2,777,072
nrdA
MCAODC_14175: yfaL - AIDA-I family autotransporter adhesin YfaL/EhaC, at 2,777,768 to 2,781,520
yfaL
Group
Condition
MCAODC
_14150
MCAODC
_14155
MCAODC
_14160
MCAODC
_14170
MCAODC
_14175
yfaE
nrdB
yoaM
nrdA
yfaL
carbon source
D-Glucose
+0.5
N.D.
N.D.
-4.0
+0.1
phage
WM_EV240
+0.2
N.D.
N.D.
-3.2
-0.1
phage
WM_RB68
-0.7
N.D.
N.D.
-2.2
-0.1
carbon source
D-Glucose
+0.5
N.D.
N.D.
-3.3
+0.2
carbon source
L-Arabinose
+0.5
N.D.
N.D.
-2.7
+0.1
phage
WM_Bas09
-0.4
N.D.
N.D.
-1.6
-0.1
phage
WM_EV240
-0.6
N.D.
N.D.
-1.4
-0.0
phage
Bas09
+0.2
N.D.
N.D.
-2.2
+0.1
phage
Bas09
-0.1
N.D.
N.D.
-0.7
-0.1
phage
EV240
+1.2
N.D.
N.D.
-2.1
+0.0
carbon source
Sodium-DL-Lactate
+0.8
N.D.
N.D.
-1.5
+0.0
no phage control
Control_ECRC101_WM
+0.1
N.D.
N.D.
-0.7
-0.0
phage
EV240
+1.5
N.D.
N.D.
-2.1
+0.1
phage
WM_Bas41
+0.4
N.D.
N.D.
-0.5
-0.1
phage
WM_Bas09
+0.4
N.D.
N.D.
-0.2
-0.1
carbon source
Casamino-acids
+0.4
N.D.
N.D.
-0.3
+0.2
phage
TP9
+0.4
N.D.
N.D.
+0.1
-0.1
phage
WM_Bas14
-0.4
N.D.
N.D.
+0.8
-0.0
no phage control
Control_ECRC101_WM
+0.4
N.D.
N.D.
+0.2
+0.0
carbon source
L-Arabinose
+1.2
N.D.
N.D.
-0.7
+0.1
carbon source
Sodium-DL-Lactate
+0.8
N.D.
N.D.
-0.2
+0.1
phage
WM_TP9
+0.1
N.D.
N.D.
+0.8
-0.1
phage
Bas14
+1.1
N.D.
N.D.
+0.0
-0.1
phage
Bas14
+0.4
N.D.
N.D.
+0.8
-0.1
phage
WM_TP9
-0.1
N.D.
N.D.
+1.5
-0.1
carbon source
Casamino-acids
+0.1
N.D.
N.D.
+1.2
+0.1
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