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Protein
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Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
rhmR and rhmD are separated by 14 nucleotides
rhmD and MCAODC_14070 are separated by 56 nucleotides
MCAODC_14070 and tnp-IS3 are separated by 2 nucleotides
tnp-IS3 and tnp-IS3 overlap by 1 nucleotides
MCAODC_14060: rhmR - Uncharacterized HTH-type transcriptional regulator RhmR, at 2,754,996 to 2,755,778
rhmR
MCAODC_14065: rhmD - L-rhamnonate dehydratase, at 2,755,793 to 2,756,998
rhmD
MCAODC_14070: MCAODC_14070 - MFS transporter, at 2,757,055 to 2,757,612
_14070
MCAODC_14075: tnp-IS3 - IS3 family transposase, at 2,757,615 to 2,758,502
tnp-IS3
MCAODC_14080: tnp-IS3 - IS3 family transposase, at 2,758,502 to 2,758,828
tnp-IS3
Group
Condition
MCAODC
_14060
MCAODC
_14065
MCAODC
_14070
MCAODC
_14075
MCAODC
_14080
rhmR
rhmD
tnp-IS3
tnp-IS3
phage
WM_RB68
-0.2
-0.1
-0.3
N.D.
N.D.
phage
TP9
-0.5
+0.2
-0.2
N.D.
N.D.
phage
WM_TP9
-0.4
+0.1
-0.2
N.D.
N.D.
carbon source
L-Arabinose
+0.2
-0.3
-0.3
N.D.
N.D.
phage
EV240
-0.1
-0.2
-0.2
N.D.
N.D.
phage
Bas14
-0.3
-0.1
+0.2
N.D.
N.D.
carbon source
D-Glucose
-0.1
-0.2
+0.1
N.D.
N.D.
carbon source
Sodium-DL-Lactate
+0.1
-0.3
+0.1
N.D.
N.D.
phage
WM_Bas14
+0.1
+0.1
-0.2
N.D.
N.D.
phage
WM_EV240
+0.2
-0.1
-0.2
N.D.
N.D.
phage
Bas14
+0.1
-0.1
-0.0
N.D.
N.D.
phage
Bas09
-0.1
-0.0
+0.2
N.D.
N.D.
no phage control
Control_ECRC101_WM
+0.1
-0.1
+0.2
N.D.
N.D.
phage
WM_EV240
-0.3
+0.3
+0.1
N.D.
N.D.
phage
Bas09
-0.2
+0.2
+0.2
N.D.
N.D.
phage
WM_TP9
-0.0
-0.0
+0.2
N.D.
N.D.
phage
WM_Bas09
+0.2
-0.1
+0.1
N.D.
N.D.
phage
WM_Bas09
+0.2
+0.1
-0.0
N.D.
N.D.
carbon source
D-Glucose
+0.1
-0.2
+0.5
N.D.
N.D.
no phage control
Control_ECRC101_WM
-0.1
+0.4
+0.1
N.D.
N.D.
carbon source
L-Arabinose
+0.4
-0.1
+0.1
N.D.
N.D.
phage
EV240
+0.2
+0.2
-0.0
N.D.
N.D.
carbon source
Sodium-DL-Lactate
+0.3
+0.1
+0.1
N.D.
N.D.
phage
WM_Bas41
+0.2
+0.1
+0.2
N.D.
N.D.
carbon source
Casamino-acids
-0.0
+0.2
+0.3
N.D.
N.D.
carbon source
Casamino-acids
+0.3
+0.2
+0.0
N.D.
N.D.
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