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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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500 nt
yfdX and frc are separated by 512 nucleotides
frc and oxc are separated by 53 nucleotides
oxc and yfdV are separated by 69 nucleotides
yfdV and MCAODC_12945 are separated by 73 nucleotides
MCAODC_12925: yfdX - Protein YfdX, at 2,562,431 to 2,563,066
yfdX
MCAODC_12930: frc - formyl-CoA transferase, at 2,563,579 to 2,564,829
frc
MCAODC_12935: oxc - oxalyl-CoA decarboxylase, at 2,564,883 to 2,566,577
oxc
MCAODC_12940: yfdV - transporter YfdV, at 2,566,647 to 2,567,591
yfdV
MCAODC_12945: MCAODC_12945 - CoA-transferase, at 2,567,665 to 2,567,895
_12945
Group
Condition
MCAODC
_12925
MCAODC
_12930
MCAODC
_12935
MCAODC
_12940
MCAODC
_12945
yfdX
frc
oxc
yfdV
phage
Bas09
-1.0
+0.1
+0.1
+0.2
-0.9
carbon source
L-Arabinose
-0.0
+0.2
+0.2
-0.1
-1.5
phage
EV240
-1.1
-0.4
+0.0
+0.0
+0.5
phage
WM_EV240
+0.4
+0.1
+0.3
-0.2
-1.5
phage
Bas14
-0.9
+0.1
+0.2
-0.5
+0.2
phage
WM_Bas41
+0.4
-0.1
-0.1
-0.0
-1.0
no phage control
Control_ECRC101_WM
-0.1
-0.1
-0.4
+0.1
-0.2
phage
WM_Bas09
-0.5
-0.3
-0.2
+0.2
+0.3
phage
WM_RB68
+0.2
-0.1
-0.1
-0.1
-0.2
phage
EV240
-0.3
-0.4
-0.1
-0.3
+0.8
phage
WM_TP9
+0.2
-0.4
+0.1
-0.1
+0.2
carbon source
Casamino-acids
-0.1
+0.2
-0.1
+0.1
-0.1
phage
TP9
+0.3
+0.0
-0.1
+0.0
-0.1
no phage control
Control_ECRC101_WM
-0.1
+0.1
+0.0
-0.0
+0.2
carbon source
Sodium-DL-Lactate
+0.2
+0.3
+0.0
-0.1
-0.4
phage
WM_EV240
+0.1
+0.4
-0.2
+0.1
+0.1
carbon source
Sodium-DL-Lactate
-0.1
-0.1
+0.1
+0.4
-0.0
phage
WM_TP9
+0.1
+0.2
+0.1
+0.3
-0.3
carbon source
D-Glucose
+0.6
-0.2
-0.1
+0.3
-0.1
carbon source
Casamino-acids
+0.4
-0.1
+0.3
+0.0
-0.2
phage
WM_Bas09
+0.6
-0.2
-0.1
-0.2
+0.7
carbon source
L-Arabinose
+0.2
+0.2
+0.0
-0.1
+0.5
phage
Bas09
-0.0
+0.0
-0.1
+0.0
+0.9
phage
WM_Bas14
+0.3
-0.0
+0.1
-0.0
+0.6
phage
Bas14
-0.3
+0.3
+0.2
-0.1
+1.0
carbon source
D-Glucose
-0.3
+0.1
+0.4
+0.4
+1.1
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MCAODC_12930
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MCAODC_12935
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