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Protein
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Fitness for 5 genes in
Escherichia coli ECRC101
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500 nt
ypfM and acrD are separated by 98 nucleotides
acrD and narQ are separated by 163 nucleotides
narQ and aegA are separated by 205 nucleotides
aegA and nudK are separated by 67 nucleotides
MCAODC_12495: ypfM - protein YpfM, at 2,477,975 to 2,478,034
ypfM
MCAODC_12500: acrD - multidrug efflux RND transporter permease AcrD, at 2,478,133 to 2,481,246
acrD
MCAODC_12505: narQ - nitrate/nitrite two-component system sensor histidine kinase NarQ, at 2,481,410 to 2,483,110
narQ
MCAODC_12510: aegA - formate-dependent uric acid utilization protein AegA, at 2,483,316 to 2,485,295
aegA
MCAODC_12515: nudK - GDP-mannose pyrophosphatase NudK, at 2,485,363 to 2,485,938
nudK
Group
Condition
MCAODC
_12495
MCAODC
_12500
MCAODC
_12505
MCAODC
_12510
MCAODC
_12515
ypfM
acrD
narQ
aegA
nudK
phage
Bas09
-1.6
-0.1
-0.2
-0.4
-0.2
phage
TP9
-2.0
+0.1
-0.1
+0.0
-0.1
phage
WM_Bas41
-1.8
-0.1
+0.0
+0.3
+0.3
phage
EV240
-1.1
-0.0
+0.1
-0.0
+0.1
phage
Bas14
-0.3
-0.0
-0.3
-0.3
+0.2
phage
WM_RB68
-0.6
+0.0
-0.0
-0.0
+0.1
no phage control
Control_ECRC101_WM
-0.5
+0.2
-0.0
-0.0
-0.1
carbon source
L-Arabinose
-0.7
+0.2
-0.1
-0.0
+0.2
phage
WM_Bas09
-0.3
+0.0
+0.0
-0.1
+0.0
phage
EV240
-0.6
-0.1
+0.0
-0.1
+0.4
phage
Bas09
-0.3
-0.0
-0.0
+0.0
+0.0
no phage control
Control_ECRC101_WM
-0.2
+0.1
-0.1
+0.1
-0.1
phage
WM_TP9
-0.1
+0.2
-0.1
-0.1
-0.1
phage
WM_EV240
-0.8
+0.1
+0.0
+0.2
+0.4
phage
WM_EV240
-0.1
+0.0
+0.0
-0.0
+0.0
phage
WM_Bas14
+0.3
+0.1
-0.2
-0.2
-0.0
carbon source
Sodium-DL-Lactate
-0.1
-0.0
+0.1
+0.0
+0.1
phage
Bas14
+0.6
-0.1
-0.0
-0.2
+0.3
phage
WM_Bas09
+0.8
+0.0
+0.0
-0.2
+0.1
phage
WM_TP9
+0.3
+0.2
+0.1
+0.1
+0.2
carbon source
D-Glucose
+0.5
+0.1
+0.1
+0.2
+0.2
carbon source
D-Glucose
+0.3
+0.3
+0.1
+0.4
+0.1
carbon source
L-Arabinose
+0.3
+0.3
+0.3
+0.5
+0.0
carbon source
Sodium-DL-Lactate
+0.7
+0.1
+0.2
+0.2
+0.3
carbon source
Casamino-acids
+0.9
+0.1
+0.2
+0.3
-0.0
carbon source
Casamino-acids
+0.8
+0.2
+0.2
+0.2
+0.3
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