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Protein
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Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
dmsB and dmsC overlap by 8 nucleotides
dmsC and dsrA overlap by 1 nucleotides
dsrA and ndk are separated by 140 nucleotides
ndk and rlmN are separated by 149 nucleotides
MCAODC_12220: dmsB - dimethylsulfoxide reductase subunit B, at 2,421,522 to 2,422,151
dmsB
MCAODC_12225: dmsC - dimethyl sulfoxide reductase, at 2,422,144 to 2,422,965
dmsC
MCAODC_12230: dsrA - ferredoxin, at 2,422,965 to 2,423,819
dsrA
MCAODC_12235: ndk - nucleoside-diphosphate kinase, at 2,423,960 to 2,424,391
ndk
MCAODC_12240: rlmN - bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN, at 2,424,541 to 2,425,695
rlmN
Group
Condition
MCAODC
_12220
MCAODC
_12225
MCAODC
_12230
MCAODC
_12235
MCAODC
_12240
dmsB
dmsC
dsrA
ndk
rlmN
phage
WM_Bas09
-0.2
-0.0
+0.1
-0.9
-0.1
phage
WM_Bas41
-0.2
-0.1
+0.3
-0.9
-0.2
no phage control
Control_ECRC101_WM
+0.0
+0.2
+0.1
-1.2
+0.0
carbon source
Sodium-DL-Lactate
-0.4
-0.1
-0.1
-0.5
+0.2
phage
WM_Bas14
+0.0
+0.0
+0.0
-0.9
+0.1
no phage control
Control_ECRC101_WM
-0.1
-0.0
-0.2
-0.5
+0.0
phage
Bas09
-0.2
-0.3
-0.0
-0.4
+0.1
phage
Bas14
+0.1
-0.1
-0.5
-0.4
+0.3
phage
WM_EV240
-0.4
-0.1
+0.2
-0.6
+0.4
phage
WM_RB68
-0.2
-0.2
-0.2
+0.0
-0.1
carbon source
L-Arabinose
+0.0
+0.1
-0.1
-0.6
-0.0
phage
Bas09
+0.0
-0.0
+0.0
-0.8
+0.4
phage
Bas14
+0.1
-0.2
+0.0
-0.4
+0.3
carbon source
D-Glucose
+0.3
+0.2
+0.1
-0.6
+0.1
carbon source
Sodium-DL-Lactate
-0.0
+0.1
+0.1
-0.1
+0.2
carbon source
Casamino-acids
-0.2
+0.1
-0.1
+0.4
+0.1
phage
WM_Bas09
-0.0
+0.1
+0.2
+0.1
+0.0
carbon source
D-Glucose
+0.0
+0.2
+0.2
-0.1
+0.1
carbon source
Casamino-acids
-0.4
+0.2
+0.0
+0.7
-0.1
carbon source
L-Arabinose
+0.2
+0.1
+0.2
+0.1
-0.1
phage
WM_EV240
+0.1
+0.0
-0.4
+0.4
+0.4
phage
WM_TP9
+0.1
+0.1
+0.3
+0.1
+0.1
phage
EV240
+0.3
-0.2
-0.2
+0.0
+0.6
phage
EV240
+0.1
+0.1
-0.3
+0.1
+0.7
phage
WM_TP9
-0.2
+0.1
+0.2
+0.6
+0.1
phage
TP9
+0.4
+0.3
+0.3
+0.4
+0.2
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