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Fitness for 5 genes in
Escherichia coli ECRC101
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500 nt
hcaT and csiE overlap by 9 nucleotides
csiE and yhfR are separated by 190 nucleotides
yhfR and suhB are separated by 144 nucleotides
suhB and trmJ are separated by 118 nucleotides
MCAODC_12120: hcaT - 3-phenylpropionate MFS transporter, at 2,396,618 to 2,397,757
hcaT
MCAODC_12125: csiE - stationary phase inducible protein CsiE, at 2,397,749 to 2,399,029
csiE
MCAODC_12130: yhfR - Uncharacterized protein YfhR, at 2,399,220 to 2,400,074
yhfR
MCAODC_12135: suhB - inositol-1-monophosphatase, at 2,400,219 to 2,401,022
suhB
MCAODC_12140: trmJ - tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ, at 2,401,141 to 2,401,878
trmJ
Group
Condition
MCAODC
_12120
MCAODC
_12125
MCAODC
_12130
MCAODC
_12135
MCAODC
_12140
hcaT
csiE
yhfR
suhB
trmJ
phage
Bas14
-0.2
-0.0
-0.6
N.D.
-0.3
carbon source
D-Glucose
-0.2
-0.1
+0.1
N.D.
-0.4
phage
EV240
-0.0
-0.2
+0.2
N.D.
-0.4
phage
Bas09
+0.1
-0.3
+0.1
N.D.
-0.3
phage
WM_EV240
-0.1
-0.2
+0.0
N.D.
-0.1
carbon source
D-Glucose
-0.1
-0.2
+0.2
N.D.
-0.3
phage
Bas09
-0.0
-0.1
+0.3
N.D.
-0.5
phage
Bas14
-0.2
-0.2
+0.3
N.D.
-0.2
phage
EV240
+0.1
-0.3
+0.3
N.D.
-0.3
phage
WM_Bas14
-0.0
+0.1
-0.1
N.D.
-0.1
carbon source
L-Arabinose
+0.1
+0.1
-0.0
N.D.
-0.4
no phage control
Control_ECRC101_WM
+0.1
+0.1
-0.1
N.D.
-0.3
carbon source
Casamino-acids
+0.1
+0.0
+0.3
N.D.
-0.5
phage
WM_RB68
-0.0
-0.1
+0.0
N.D.
-0.0
carbon source
Sodium-DL-Lactate
+0.1
+0.1
+0.0
N.D.
-0.1
carbon source
L-Arabinose
-0.1
-0.0
-0.1
N.D.
+0.3
carbon source
Sodium-DL-Lactate
+0.2
+0.0
-0.0
N.D.
+0.1
phage
WM_EV240
-0.1
+0.0
-0.0
N.D.
+0.4
no phage control
Control_ECRC101_WM
-0.0
+0.2
+0.1
N.D.
-0.0
phage
TP9
+0.2
-0.1
+0.3
N.D.
-0.2
carbon source
Casamino-acids
+0.0
+0.4
+0.1
N.D.
-0.2
phage
WM_Bas41
+0.3
+0.0
+0.2
N.D.
-0.2
phage
WM_Bas09
+0.1
-0.0
+0.1
N.D.
+0.3
phage
WM_Bas09
+0.1
+0.1
+0.1
N.D.
+0.4
phage
WM_TP9
+0.3
+0.1
+0.1
N.D.
+0.4
phage
WM_TP9
+0.3
+0.2
+0.3
N.D.
+0.4
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