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Protein
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Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
doxX and hcaD are separated by 96 nucleotides
hcaD and hcaB are separated by 9 nucleotides
hcaB and hcaC overlap by 4 nucleotides
hcaC and hcaF overlap by 1 nucleotides
MCAODC_12085: doxX - DoxX, at 2,390,696 to 2,391,118
doxX
MCAODC_12090: hcaD - phenylpropionate dioxygenase ferredoxin reductase subunit, at 2,391,215 to 2,392,417
hcaD
MCAODC_12095: hcaB - 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase, at 2,392,427 to 2,393,239
hcaB
MCAODC_12100: hcaC - bifunctional 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit, at 2,393,236 to 2,393,556
hcaC
MCAODC_12105: hcaF - 3-phenylpropionate/cinnamic acid dioxygenase subunit beta, at 2,393,556 to 2,394,074
hcaF
Group
Condition
MCAODC
_12085
MCAODC
_12090
MCAODC
_12095
MCAODC
_12100
MCAODC
_12105
doxX
hcaD
hcaB
hcaC
hcaF
phage
EV240
-0.1
-0.0
+0.0
-0.2
-0.9
phage
WM_EV240
-0.1
-0.2
-0.2
+0.2
-0.4
phage
WM_Bas14
-0.2
-0.0
-0.2
+0.1
-0.3
no phage control
Control_ECRC101_WM
-0.0
-0.0
-0.1
-0.0
-0.4
phage
WM_EV240
+0.0
+0.0
+0.1
+0.1
-0.7
phage
WM_RB68
-0.0
-0.1
-0.1
+0.0
-0.2
phage
Bas09
+0.0
-0.1
+0.3
-0.1
-0.4
phage
EV240
+0.1
-0.2
+0.4
-0.3
-0.4
phage
WM_Bas09
-0.1
-0.0
-0.2
+0.1
-0.1
carbon source
Sodium-DL-Lactate
-0.1
-0.1
+0.0
-0.2
+0.0
phage
Bas14
+0.1
-0.2
+0.1
-0.1
-0.2
phage
WM_Bas09
-0.1
+0.1
-0.2
+0.0
-0.1
carbon source
Casamino-acids
+0.0
+0.0
+0.0
-0.7
+0.4
phage
WM_Bas41
+0.0
+0.2
-0.2
-0.4
+0.1
phage
Bas14
+0.1
-0.2
+0.1
+0.0
-0.1
phage
Bas09
+0.1
-0.1
-0.1
+0.2
-0.1
carbon source
D-Glucose
-0.1
-0.1
-0.0
-0.2
+0.4
no phage control
Control_ECRC101_WM
+0.2
-0.0
-0.2
+0.3
-0.2
carbon source
D-Glucose
-0.0
+0.1
+0.3
-0.3
+0.1
phage
WM_TP9
+0.0
+0.1
+0.1
+0.2
-0.1
carbon source
Casamino-acids
-0.1
-0.0
+0.3
+0.0
+0.2
carbon source
Sodium-DL-Lactate
-0.0
+0.0
-0.1
+0.1
+0.3
phage
WM_TP9
+0.1
+0.2
+0.1
+0.1
+0.1
carbon source
L-Arabinose
+0.2
+0.1
+0.2
+0.0
+0.2
carbon source
L-Arabinose
+0.2
+0.1
+0.2
+0.0
+0.4
phage
TP9
+0.1
-0.0
+0.3
+0.7
+0.2
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