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Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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500 nt
hypE and hypD overlap by 4 nucleotides
hypD and hypC overlap by 1 nucleotides
hypC and hypB overlap by 10 nucleotides
hypB and hypA are separated by 3 nucleotides
MCAODC_11070: hypE - hydrogenase maturation carbamoyl dehydratase HypE, at 2,206,801 to 2,207,811
hypE
MCAODC_11075: hypD - hydrogenase formation protein HypD, at 2,207,808 to 2,208,929
hypD
MCAODC_11080: hypC - hydrogenase 3 maturation protein HypC, at 2,208,929 to 2,209,201
hypC
MCAODC_11085: hypB - hydrogenase nickel incorporation protein HypB, at 2,209,192 to 2,210,064
hypB
MCAODC_11090: hypA - hydrogenase maturation nickel metallochaperone HypA, at 2,210,068 to 2,210,418
hypA
Group
Condition
MCAODC
_11070
MCAODC
_11075
MCAODC
_11080
MCAODC
_11085
MCAODC
_11090
hypE
hypD
hypC
hypB
hypA
phage
WM_Bas41
-0.4
-0.3
-0.6
+0.5
+0.1
phage
WM_RB68
+0.1
-0.1
-0.3
-0.4
-0.0
carbon source
Casamino-acids
-0.1
-0.0
+0.0
-0.5
+0.1
phage
WM_Bas14
+0.1
+0.0
-0.0
-0.8
+0.2
no phage control
Control_ECRC101_WM
-0.1
-0.1
-0.0
-0.3
+0.1
phage
WM_EV240
-0.3
-0.0
-0.2
-0.2
+0.2
phage
Bas14
+0.2
+0.2
-0.6
-0.3
+0.1
no phage control
Control_ECRC101_WM
+0.1
-0.3
-0.5
-0.0
+0.5
phage
WM_Bas09
-0.2
-0.2
-0.0
-0.2
+0.3
phage
WM_TP9
-0.0
-0.1
+0.2
-0.2
+0.0
phage
EV240
+0.3
-0.0
+0.1
+0.2
-0.7
carbon source
L-Arabinose
-0.0
+0.1
-0.1
+0.1
-0.1
carbon source
Sodium-DL-Lactate
-0.1
-0.1
+0.3
-0.1
-0.1
carbon source
Sodium-DL-Lactate
-0.0
-0.0
+0.0
+0.1
-0.0
phage
Bas14
+0.4
-0.1
+0.2
-0.1
-0.2
phage
TP9
+0.0
-0.1
-0.1
+0.4
+0.1
phage
EV240
+0.0
+0.2
-0.6
+0.8
-0.0
phage
Bas09
+0.3
+0.2
+0.0
+0.1
-0.2
carbon source
Casamino-acids
+0.2
+0.1
+0.2
+0.1
-0.2
phage
WM_Bas09
+0.0
+0.1
+0.2
+0.3
-0.1
phage
WM_EV240
+0.1
+0.0
+0.4
-0.1
+0.1
carbon source
D-Glucose
+0.1
+0.0
-0.0
+0.4
+0.1
carbon source
L-Arabinose
+0.6
+0.1
-0.3
+0.2
+0.2
phage
WM_TP9
-0.0
+0.1
+0.1
+0.3
+0.4
phage
Bas09
+0.1
+0.1
+0.3
+0.3
+0.1
carbon source
D-Glucose
+0.1
+0.4
+0.3
+0.3
+0.2
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