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Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
gudD and barA are separated by 232 nucleotides
barA and rlmD are separated by 56 nucleotides
rlmD and relA are separated by 47 nucleotides
relA and mazE are separated by 77 nucleotides
MCAODC_10760: gudD - glucarate dehydratase, at 2,143,012 to 2,144,352
gudD
MCAODC_10765: barA - two-component sensor histidine kinase BarA, at 2,144,585 to 2,147,341
barA
MCAODC_10770: rlmD - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 2,147,398 to 2,148,699
rlmD
MCAODC_10775: relA - GTP diphosphokinase, at 2,148,747 to 2,150,981
relA
MCAODC_10780: mazE - type II toxin-antitoxin system antitoxin MazE, at 2,151,059 to 2,151,307
mazE
Group
Condition
MCAODC
_10760
MCAODC
_10765
MCAODC
_10770
MCAODC
_10775
MCAODC
_10780
gudD
barA
rlmD
relA
mazE
carbon source
D-Glucose
+0.1
+0.1
-0.0
-0.6
-4.1
carbon source
D-Glucose
+0.1
-0.1
+0.1
-0.5
-1.6
phage
WM_EV240
-0.1
-0.1
+0.1
+0.1
-1.7
no phage control
Control_ECRC101_WM
-0.0
-0.0
+0.0
+0.0
-1.3
phage
WM_Bas09
-0.2
+0.1
-0.2
+0.1
-1.1
carbon source
Sodium-DL-Lactate
-0.1
-0.2
-0.0
+0.1
-0.9
carbon source
Casamino-acids
+0.0
+0.3
-0.1
+0.4
-1.6
phage
WM_Bas41
-0.1
-0.0
-0.3
-0.5
-0.1
phage
TP9
+0.1
-0.2
-0.1
-0.0
-0.5
phage
EV240
-0.1
-0.4
-0.1
+0.3
-0.4
phage
Bas09
-0.1
-0.1
+0.1
-0.0
-0.5
phage
EV240
-0.1
-0.2
-0.1
+0.2
-0.3
carbon source
Sodium-DL-Lactate
+0.0
-0.3
-0.1
+0.1
-0.2
phage
WM_TP9
-0.2
+0.1
+0.1
-0.1
-0.4
phage
WM_Bas09
+0.1
+0.3
-0.2
+0.1
-0.6
carbon source
L-Arabinose
-0.3
-0.0
+0.1
-0.2
+0.2
phage
WM_EV240
-0.1
-0.2
-0.1
+0.3
+0.1
carbon source
L-Arabinose
-0.1
-0.0
-0.2
-0.3
+0.8
phage
Bas09
-0.1
-0.0
-0.1
+0.0
+0.4
no phage control
Control_ECRC101_WM
-0.1
+0.1
-0.1
-0.0
+0.4
phage
WM_Bas14
+0.0
+0.2
-0.2
+0.1
+0.1
carbon source
Casamino-acids
-0.1
+0.2
+0.2
+0.3
+0.3
phage
Bas14
+0.0
-0.1
-0.2
+0.4
+0.8
phage
Bas14
-0.3
+0.0
-0.3
+0.7
+0.9
phage
WM_TP9
-0.2
+0.4
-0.0
+0.2
+0.6
phage
WM_RB68
+0.1
+0.3
+0.1
+0.4
+0.6
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