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Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
queF and syd are separated by 67 nucleotides
syd and MCAODC_10730 are separated by 621 nucleotides
MCAODC_10730 and truC overlap by 1 nucleotides
truC and yqcA are separated by 17 nucleotides
MCAODC_10715: queF - NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, at 2,136,201 to 2,137,049
queF
MCAODC_10720: syd - SecY-interacting protein, at 2,137,117 to 2,137,662
syd
MCAODC_10730: MCAODC_10730 - tRNA pseudouridine synthase C, at 2,138,284 to 2,138,613
_10730
MCAODC_10735: truC - tRNA pseudouridine(65) synthase TruC, at 2,138,613 to 2,139,395
truC
MCAODC_10740: yqcA - flavodoxin, at 2,139,413 to 2,139,862
yqcA
Group
Condition
MCAODC
_10715
MCAODC
_10720
MCAODC
_10730
MCAODC
_10735
MCAODC
_10740
queF
syd
truC
yqcA
phage
WM_EV240
-0.2
-0.3
-0.1
-0.1
-0.3
phage
EV240
-0.1
-0.2
+0.3
-0.6
-0.2
no phage control
Control_ECRC101_WM
+0.2
-0.2
-0.2
-0.4
-0.3
phage
WM_Bas09
-0.2
-0.1
+0.1
-0.3
-0.1
carbon source
D-Glucose
+0.1
+0.2
-0.5
-0.0
-0.3
phage
WM_Bas14
-0.0
-0.2
+0.0
+0.2
-0.2
carbon source
Sodium-DL-Lactate
-0.2
+0.1
+0.0
-0.2
-0.0
carbon source
Sodium-DL-Lactate
+0.0
-0.1
+0.1
-0.3
+0.1
phage
WM_Bas41
-0.1
-0.0
+0.2
+0.0
-0.2
phage
WM_RB68
+0.1
+0.2
-0.1
-0.1
-0.2
carbon source
Casamino-acids
-0.1
+0.2
+0.1
-0.2
-0.0
phage
Bas14
+0.1
-0.2
-0.3
+0.2
+0.3
phage
WM_TP9
-0.3
-0.1
+0.2
+0.3
+0.0
phage
WM_Bas09
-0.2
-0.0
+0.1
+0.4
-0.2
carbon source
L-Arabinose
-0.1
-0.0
+0.2
-0.0
-0.0
phage
Bas09
+0.1
-0.1
+0.3
-0.0
-0.2
phage
TP9
-0.1
+0.0
+0.1
+0.1
-0.0
no phage control
Control_ECRC101_WM
+0.0
-0.0
+0.1
+0.2
-0.1
phage
EV240
-0.2
+0.3
+0.0
+0.2
-0.0
carbon source
D-Glucose
+0.2
-0.0
+0.0
+0.2
-0.0
phage
WM_TP9
+0.1
-0.1
-0.1
+0.3
+0.2
phage
WM_EV240
-0.1
+0.4
-0.1
+0.5
-0.3
carbon source
Casamino-acids
-0.3
+0.2
+0.3
+0.3
-0.1
phage
Bas09
-0.1
+0.1
-0.2
+0.3
+0.4
phage
Bas14
-0.0
+0.1
-0.2
+0.6
+0.2
carbon source
L-Arabinose
+0.1
-0.1
-0.2
+0.9
+0.1
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