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Cofit
Fitness for 5 genes in
Escherichia coli ECRC101
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500 nt
amiC and fMet_trna are separated by 73 nucleotides
fMet_trna and fMet_trna are separated by 33 nucleotides
fMet_trna and fMet_trna are separated by 33 nucleotides
fMet_trna and mltA are separated by 208 nucleotides
MCAODC_10590: amiC - N-acetylmuramoyl-L-alanine amidase AmiC, at 2,113,387 to 2,114,640
amiC
MCAODC_10595: fMet_trna - tRNA-fMet(cat), at 2,114,714 to 2,114,790
_trna
MCAODC_10600: fMet_trna - tRNA-fMet(cat), at 2,114,824 to 2,114,900
_trna
MCAODC_10605: fMet_trna - tRNA-fMet(cat), at 2,114,934 to 2,115,010
_trna
MCAODC_10610: mltA - murein transglycosylase A, at 2,115,219 to 2,116,316
mltA
Group
Condition
MCAODC
_10590
MCAODC
_10595
MCAODC
_10600
MCAODC
_10605
MCAODC
_10610
amiC
fMet_trna
fMet_trna
fMet_trna
mltA
phage
Bas14
-0.1
N.D.
N.D.
N.D.
-0.1
phage
EV240
+0.1
N.D.
N.D.
N.D.
-0.3
phage
EV240
+0.1
N.D.
N.D.
N.D.
-0.2
carbon source
Sodium-DL-Lactate
+0.0
N.D.
N.D.
N.D.
-0.1
carbon source
L-Arabinose
-0.1
N.D.
N.D.
N.D.
+0.1
carbon source
Casamino-acids
+0.1
N.D.
N.D.
N.D.
-0.0
phage
WM_EV240
+0.1
N.D.
N.D.
N.D.
-0.0
carbon source
Sodium-DL-Lactate
+0.1
N.D.
N.D.
N.D.
+0.0
phage
TP9
-0.0
N.D.
N.D.
N.D.
+0.1
phage
WM_Bas09
+0.2
N.D.
N.D.
N.D.
-0.1
carbon source
D-Glucose
+0.1
N.D.
N.D.
N.D.
+0.0
carbon source
D-Glucose
+0.1
N.D.
N.D.
N.D.
+0.1
phage
Bas14
+0.3
N.D.
N.D.
N.D.
-0.2
phage
WM_Bas14
+0.1
N.D.
N.D.
N.D.
+0.0
carbon source
Casamino-acids
+0.1
N.D.
N.D.
N.D.
+0.1
phage
Bas09
+0.2
N.D.
N.D.
N.D.
+0.0
no phage control
Control_ECRC101_WM
+0.1
N.D.
N.D.
N.D.
+0.1
phage
WM_TP9
+0.2
N.D.
N.D.
N.D.
+0.1
phage
WM_Bas09
+0.2
N.D.
N.D.
N.D.
+0.0
phage
WM_Bas41
+0.1
N.D.
N.D.
N.D.
+0.1
phage
WM_EV240
+0.3
N.D.
N.D.
N.D.
-0.0
phage
WM_RB68
+0.2
N.D.
N.D.
N.D.
+0.1
carbon source
L-Arabinose
+0.3
N.D.
N.D.
N.D.
+0.0
phage
WM_TP9
+0.2
N.D.
N.D.
N.D.
+0.1
no phage control
Control_ECRC101_WM
+0.3
N.D.
N.D.
N.D.
+0.0
phage
Bas09
+0.4
N.D.
N.D.
N.D.
+0.1
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