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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
argO and yggE are separated by 92 nucleotides
yggE and MCAODC_09940 are separated by 166 nucleotides
MCAODC_09940 and ygfI are separated by 6 nucleotides
ygfI and scpC overlap by 4 nucleotides
MCAODC_09930: argO - arginine exporter ArgO, at 1,978,513 to 1,979,148
argO
MCAODC_09935: yggE - oxidative stress defense protein, at 1,979,241 to 1,979,981
yggE
MCAODC_09940: MCAODC_09940 - LysR family transcriptional regulator, at 1,980,148 to 1,980,726
_09940
MCAODC_09945: ygfI - Uncharacterized HTH-type transcriptional regulator YgfI, at 1,980,733 to 1,981,044
ygfI
MCAODC_09950: scpC - propionyl-CoA:succinate CoA transferase, at 1,981,041 to 1,982,519
scpC
Group
Condition
MCAODC
_09930
MCAODC
_09935
MCAODC
_09940
MCAODC
_09945
MCAODC
_09950
argO
yggE
ygfI
scpC
phage
WM_EV240
-0.4
-0.0
-0.1
-0.2
-0.2
phage
TP9
-0.1
-0.1
-0.2
-0.1
-0.1
no phage control
Control_ECRC101_WM
+0.2
-0.1
+0.1
-0.6
-0.0
carbon source
D-Glucose
+0.1
+0.1
-0.0
-0.3
-0.1
phage
WM_TP9
-0.0
-0.1
-0.1
+0.0
-0.1
carbon source
Sodium-DL-Lactate
-0.0
-0.3
+0.2
+0.2
-0.2
phage
Bas14
-0.2
+0.3
+0.0
-0.3
+0.1
phage
WM_TP9
-0.0
+0.1
+0.0
+0.1
-0.3
no phage control
Control_ECRC101_WM
+0.2
+0.1
-0.0
-0.1
-0.2
phage
EV240
+0.2
-0.0
-0.2
-0.1
+0.1
carbon source
Sodium-DL-Lactate
-0.3
-0.1
+0.2
+0.0
+0.2
phage
WM_Bas41
+0.1
+0.1
-0.3
-0.0
+0.2
phage
WM_RB68
+0.0
+0.0
+0.1
-0.2
+0.0
phage
Bas09
+0.2
-0.1
-0.1
+0.1
-0.1
carbon source
D-Glucose
+0.0
-0.1
+0.2
-0.1
+0.0
phage
WM_Bas14
+0.1
+0.2
-0.1
-0.1
+0.0
phage
EV240
+0.2
-0.3
+0.1
+0.0
+0.1
carbon source
L-Arabinose
-0.0
+0.1
+0.1
+0.1
-0.1
phage
WM_Bas09
+0.1
-0.0
-0.0
-0.0
+0.2
phage
WM_EV240
+0.1
+0.1
+0.0
-0.1
+0.1
carbon source
L-Arabinose
+0.0
+0.1
+0.1
+0.2
-0.2
phage
WM_Bas09
+0.0
-0.0
+0.1
-0.1
+0.3
carbon source
Casamino-acids
+0.3
+0.0
+0.1
+0.1
-0.1
carbon source
Casamino-acids
+0.1
+0.0
+0.4
+0.1
-0.1
phage
Bas14
-0.2
+0.1
+0.4
+0.1
+0.3
phage
Bas09
+0.2
+0.2
+0.2
+0.1
+0.2
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