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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
glpX and fumE are separated by 21 nucleotides
fumE and coaA overlap by 4 nucleotides
coaA and cysA overlap by 29 nucleotides
cysA and ecfA2 overlap by 7 nucleotides
MCAODC_09865: glpX - class II fructose-bisphosphatase, at 1,968,004 to 1,968,969
glpX
MCAODC_09870: fumE - fumarase E, at 1,968,991 to 1,969,500
fumE
MCAODC_09875: coaA - nucleoside/nucleotide kinase family protein, at 1,969,497 to 1,970,210
coaA
MCAODC_09880: cysA - ABC transporter ATP-binding protein, at 1,970,182 to 1,970,859
cysA
MCAODC_09885: ecfA2 - cobalt ABC transporter ATP-binding protein, at 1,970,853 to 1,971,530
ecfA2
Group
Condition
MCAODC
_09865
MCAODC
_09870
MCAODC
_09875
MCAODC
_09880
MCAODC
_09885
glpX
fumE
coaA
cysA
ecfA2
carbon source
Sodium-DL-Lactate
+0.0
-0.3
-0.0
-0.1
-0.3
no phage control
Control_ECRC101_WM
-0.0
-0.0
+0.0
-0.7
+0.5
phage
WM_EV240
+0.3
+0.0
-0.1
-0.6
+0.3
carbon source
Sodium-DL-Lactate
-0.2
-0.1
+0.2
-0.1
+0.0
phage
EV240
+0.1
+0.1
+0.1
-0.0
-0.4
phage
WM_Bas41
-0.1
+0.2
-0.2
-0.2
+0.3
phage
WM_RB68
+0.0
+0.4
+0.1
-0.4
-0.1
carbon source
L-Arabinose
+0.0
+0.3
+0.0
-0.1
-0.1
phage
Bas14
+0.1
+0.1
+0.2
-0.3
-0.0
phage
Bas14
+0.0
-0.4
+0.1
+0.2
+0.1
phage
TP9
-0.2
+0.4
+0.4
-0.0
-0.3
carbon source
D-Glucose
+0.0
+0.1
+0.2
-0.1
-0.2
phage
WM_EV240
-0.0
+0.0
+0.0
-0.3
+0.4
phage
WM_Bas14
-0.1
+0.4
+0.2
-0.3
-0.0
phage
Bas09
-0.2
+0.3
-0.0
-0.1
+0.3
no phage control
Control_ECRC101_WM
-0.0
+0.2
+0.0
+0.0
+0.1
phage
WM_Bas09
+0.1
+0.1
+0.1
-0.1
+0.1
phage
Bas09
+0.2
-0.3
+0.0
+0.2
+0.3
phage
WM_TP9
+0.1
+0.0
-0.0
-0.0
+0.3
phage
EV240
+0.2
+0.2
+0.2
-0.1
-0.2
carbon source
Casamino-acids
+0.1
+0.1
+0.3
-0.2
+0.2
carbon source
Casamino-acids
-0.0
-0.0
-0.0
+0.1
+0.4
phage
WM_TP9
+0.0
+0.3
+0.1
-0.1
+0.0
phage
WM_Bas09
-0.0
+0.3
-0.0
+0.1
+0.2
carbon source
D-Glucose
-0.3
+0.0
-0.0
+0.2
+0.5
carbon source
L-Arabinose
-0.1
+0.1
+0.2
-0.0
+0.4
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