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Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
lpoA and rsmI are separated by 64 nucleotides
rsmI and MCAODC_08760 are separated by 42 nucleotides
MCAODC_08760 and MCAODC_08765 overlap by 25 nucleotides
MCAODC_08765 and yraJ are separated by 10 nucleotides
MCAODC_08750: lpoA - penicillin-binding protein activator LpoA, at 1,748,261 to 1,750,297
lpoA
MCAODC_08755: rsmI - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 1,750,362 to 1,751,222
rsmI
MCAODC_08760: MCAODC_08760 - fimbrial protein, at 1,751,265 to 1,751,615
_08760
MCAODC_08765: MCAODC_08765 - Putative fimbrial protein, at 1,751,591 to 1,751,998
_08765
MCAODC_08770: yraJ - Outer membrane usher protein YraJ, at 1,752,009 to 1,754,525
yraJ
Group
Condition
MCAODC
_08750
MCAODC
_08755
MCAODC
_08760
MCAODC
_08765
MCAODC
_08770
lpoA
rsmI
yraJ
phage
EV240
-1.0
-0.2
-0.2
-0.1
-0.1
carbon source
Sodium-DL-Lactate
-0.2
-0.5
-0.1
-0.3
-0.0
phage
Bas14
-0.3
-0.8
+0.1
-0.1
+0.0
carbon source
L-Arabinose
-0.6
-0.2
-0.0
-0.3
+0.0
carbon source
Sodium-DL-Lactate
-0.3
-0.5
+0.1
-0.1
+0.0
carbon source
Casamino-acids
-0.2
-0.5
+0.1
-0.2
+0.0
phage
EV240
-1.0
+0.1
+0.1
+0.1
-0.1
phage
Bas09
-0.5
-0.3
+0.0
+0.0
-0.0
phage
WM_TP9
-0.1
-0.6
-0.1
-0.1
+0.2
phage
WM_Bas14
-0.1
-0.3
-0.3
-0.1
+0.1
phage
TP9
-0.2
-0.2
+0.1
-0.1
+0.0
carbon source
D-Glucose
+0.0
-0.2
-0.1
-0.1
+0.0
phage
WM_RB68
-0.3
-0.1
-0.0
-0.1
+0.2
phage
WM_EV240
-0.2
-0.2
-0.0
-0.1
+0.1
phage
WM_TP9
-0.2
-0.1
-0.1
+0.1
+0.0
phage
WM_Bas09
+0.0
-0.3
-0.0
-0.1
+0.1
carbon source
D-Glucose
-0.2
-0.0
+0.1
-0.1
-0.0
carbon source
Casamino-acids
-0.1
-0.0
+0.1
-0.1
+0.0
no phage control
Control_ECRC101_WM
-0.2
-0.1
-0.1
+0.1
+0.1
carbon source
L-Arabinose
-0.2
+0.2
-0.1
-0.1
+0.1
phage
WM_EV240
+0.1
+0.0
+0.1
-0.3
+0.0
phage
Bas14
+0.2
-0.2
+0.2
-0.1
-0.1
phage
WM_Bas41
-0.2
-0.1
+0.2
-0.1
+0.1
phage
Bas09
-0.3
-0.3
+0.3
+0.2
+0.1
phage
WM_Bas09
-0.1
+0.0
-0.2
+0.2
+0.1
no phage control
Control_ECRC101_WM
+0.0
-0.0
-0.1
+0.0
+0.1
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