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Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
rtcR and rtcB are separated by 187 nucleotides
rtcB and rtcA are separated by 3 nucleotides
rtcA and MCAODC_07490 are separated by 49 nucleotides
MCAODC_07490 and MCAODC_07495 overlap by 10 nucleotides
MCAODC_07475: rtcR - DNA-binding transcriptional regulator RtcR, at 1,513,382 to 1,514,980
rtcR
MCAODC_07480: rtcB - RNA-splicing ligase RtcB, at 1,515,168 to 1,516,394
rtcB
MCAODC_07485: rtcA - RNA 3'-terminal phosphate cyclase, at 1,516,398 to 1,517,426
rtcA
MCAODC_07490: MCAODC_07490 - GNAT family N-acetyltransferase, at 1,517,476 to 1,517,961
_07490
MCAODC_07495: MCAODC_07495 - DUF1778 domain-containing protein, at 1,517,952 to 1,518,230
_07495
Group
Condition
MCAODC
_07475
MCAODC
_07480
MCAODC
_07485
MCAODC
_07490
MCAODC
_07495
rtcR
rtcB
rtcA
phage
Bas14
+0.2
+0.1
-0.1
-0.0
-1.7
carbon source
D-Glucose
-0.2
+0.0
+0.0
-0.0
-0.8
no phage control
Control_ECRC101_WM
+0.1
+0.1
-0.0
-0.3
-0.5
carbon source
Sodium-DL-Lactate
-0.2
+0.1
-0.1
+0.1
-0.5
phage
WM_EV240
-0.0
-0.2
-0.3
-0.2
+0.1
phage
WM_RB68
-0.1
+0.0
-0.0
-0.1
-0.4
carbon source
L-Arabinose
+0.1
-0.1
-0.1
-0.2
-0.2
phage
Bas09
+0.1
+0.1
-0.0
+0.2
-0.8
no phage control
Control_ECRC101_WM
-0.1
+0.0
-0.1
-0.3
+0.2
phage
WM_TP9
-0.1
+0.0
-0.0
-0.0
-0.1
phage
WM_Bas09
-0.1
+0.1
+0.1
-0.2
-0.2
phage
TP9
-0.2
+0.1
-0.3
+0.0
+0.0
carbon source
L-Arabinose
+0.1
-0.1
+0.1
+0.0
-0.2
phage
WM_TP9
+0.0
+0.0
-0.0
+0.1
-0.1
phage
WM_Bas14
+0.0
+0.1
+0.1
-0.1
-0.0
carbon source
D-Glucose
-0.1
-0.1
+0.2
+0.1
-0.1
phage
EV240
-0.0
-0.1
-0.0
+0.1
+0.1
phage
WM_EV240
-0.0
+0.2
-0.3
-0.4
+0.7
carbon source
Casamino-acids
+0.1
+0.1
+0.0
+0.2
-0.1
phage
Bas14
+0.1
+0.1
-0.3
+0.2
+0.2
phage
WM_Bas09
-0.1
+0.1
-0.1
-0.0
+0.5
carbon source
Sodium-DL-Lactate
+0.2
+0.0
+0.1
+0.0
+0.0
phage
Bas09
+0.2
+0.1
-0.1
+0.1
+0.1
carbon source
Casamino-acids
+0.1
-0.0
-0.4
-0.1
+0.8
phage
WM_Bas41
-0.0
+0.1
+0.2
-0.0
+0.3
phage
EV240
-0.0
-0.0
+0.0
+0.2
+0.4
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