Fitness for 5 genes in Escherichia coli ECRC101

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500 ntdtd and yihY overlap by 4 nucleotidesyihY and yihX overlap by 7 nucleotidesyihX and csqR are separated by 98 nucleotidescsqR and yihV are separated by 33 nucleotides MCAODC_04500: dtd - D-aminoacyl-tRNA deacylase, at 912,130 to 912,567 dtd MCAODC_04505: yihY - virulence factor BrkB family protein, at 912,564 to 913,436 yihY MCAODC_04510: yihX - glucose-1-phosphatase, at 913,430 to 914,029 yihX MCAODC_04515: csqR - HTH-type transcriptional repressor CsqR, at 914,128 to 914,913 csqR MCAODC_04520: yihV - sulfofructose kinase, at 914,947 to 915,843 yihV
Group Condition MCAODC_04500 MCAODC_04505 MCAODC_04510 MCAODC_04515 MCAODC_04520
dtd yihY yihX csqR yihV
phage TP9 -0.5 +0.0 -0.3 -0.4 -0.1
phage EV240 +0.3 -0.1 -0.5 -0.3 -0.1
phage Bas09 -0.2 +0.1 -0.1 -0.7 +0.1
phage WM_EV240 -0.1 +0.0 -0.3 -0.1 +0.0
phage EV240 -0.1 +0.1 -0.3 -0.3 +0.1
carbon source Casamino-acids +0.2 -0.0 +0.1 -0.6 -0.0
phage WM_TP9 -0.2 +0.1 -0.0 +0.1 -0.2
phage WM_EV240 +0.1 +0.0 -0.1 +0.0 -0.3
carbon source L-Arabinose +0.1 -0.2 -0.1 -0.1 +0.1
phage Bas09 -0.3 +0.1 +0.0 -0.2 +0.1
phage WM_TP9 +0.1 -0.1 +0.1 -0.1 -0.1
phage WM_Bas09 +0.0 -0.1 +0.0 -0.0 -0.0
carbon source Sodium-DL-Lactate +0.3 +0.0 -0.1 -0.2 -0.1
carbon source D-Glucose +0.3 +0.1 +0.0 -0.5 +0.1
phage Bas14 +0.1 +0.2 -0.1 -0.3 +0.0
phage WM_Bas41 +0.0 +0.1 +0.0 +0.1 -0.1
phage WM_RB68 +0.1 -0.0 -0.2 +0.3 -0.1
phage WM_Bas14 +0.3 +0.1 -0.1 -0.1 -0.1
carbon source L-Arabinose +0.5 -0.1 -0.1 -0.2 +0.0
carbon source D-Glucose +0.1 +0.0 +0.0 -0.1 +0.1
carbon source Sodium-DL-Lactate +0.4 +0.0 -0.0 -0.1 -0.0
no phage control Control_ECRC101_WM +0.1 +0.2 +0.1 -0.0 -0.1
carbon source Casamino-acids +0.4 +0.1 +0.2 -0.4 -0.0
no phage control Control_ECRC101_WM +0.1 +0.1 +0.0 +0.1 -0.0
phage WM_Bas09 +0.1 +0.2 -0.0 +0.1 +0.0
phage Bas14 +0.3 -0.0 +0.2 -0.2 +0.3
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