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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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500 nt
yjbE and pgi are separated by 512 nucleotides
pgi and lysC are separated by 524 nucleotides
lysC and yjbD are separated by 252 nucleotides
yjbD and rluF are separated by 0 nucleotides
MCAODC_03660: yjbE - Uncharacterized protein YjbE, at 735,489 to 735,731
yjbE
MCAODC_03675: pgi - glucose-6-phosphate isomerase, at 736,244 to 737,893
pgi
MCAODC_03680: lysC - lysine-sensitive aspartokinase 3, at 738,418 to 739,767
lysC
MCAODC_03685: yjbD - Uncharacterized protein YjbD, at 740,020 to 740,292
yjbD
MCAODC_03690: rluF - 23S rRNA pseudouridine(2604) synthase RluF, at 740,293 to 741,165
rluF
Group
Condition
MCAODC
_03660
MCAODC
_03675
MCAODC
_03680
MCAODC
_03685
MCAODC
_03690
yjbE
pgi
lysC
yjbD
rluF
phage
WM_EV240
+0.1
-4.3
+0.2
+0.5
-0.1
phage
WM_EV240
+0.0
-3.8
+0.3
+0.5
-0.2
carbon source
D-Glucose
-0.3
-2.5
+0.1
-0.4
-0.2
phage
Bas09
-0.7
-2.7
+0.1
+0.2
+0.2
carbon source
D-Glucose
+0.0
-2.6
+0.3
-0.2
-0.2
phage
Bas09
+0.1
-2.7
-0.0
+0.1
+0.2
phage
EV240
-0.1
-2.4
+0.0
+0.1
+0.3
phage
EV240
+0.2
-2.6
-0.2
+0.5
+0.1
phage
WM_Bas09
-0.4
-1.2
-0.2
-0.1
-0.1
phage
Bas14
-0.0
-1.8
-0.3
+0.2
+0.2
phage
Bas14
-0.5
-1.4
-0.0
+0.2
+0.2
carbon source
L-Arabinose
-0.1
-0.7
-0.0
+0.1
-0.2
phage
WM_Bas41
+0.3
-0.8
-0.1
+0.2
-0.2
no phage control
Control_ECRC101_WM
+0.0
-0.4
+0.0
-0.1
-0.2
phage
WM_Bas09
+0.3
-1.4
+0.2
+0.1
+0.0
carbon source
L-Arabinose
-0.5
-0.5
+0.2
+0.3
-0.2
phage
WM_TP9
-0.5
+0.1
-0.2
+0.2
-0.0
no phage control
Control_ECRC101_WM
-0.3
-0.1
-0.1
+0.5
-0.3
carbon source
Sodium-DL-Lactate
-0.2
-0.6
+0.3
+0.2
+0.0
carbon source
Sodium-DL-Lactate
-0.2
-0.2
+0.3
+0.2
-0.3
phage
WM_TP9
-0.5
+0.2
-0.1
+0.3
+0.0
carbon source
Casamino-acids
-0.1
-0.3
+0.3
+0.1
+0.1
phage
WM_Bas14
+0.3
+0.1
+0.1
-0.1
-0.1
carbon source
Casamino-acids
+0.4
-0.1
+0.4
-0.3
-0.2
phage
WM_RB68
-0.3
+0.3
+0.0
+0.5
+0.1
phage
TP9
+0.1
+0.1
+0.1
+0.6
+0.1
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