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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
MCAODC_03505 and yfdR are separated by 127 nucleotides
yfdR and MCAODC_03515 overlap by 10 nucleotides
MCAODC_03515 and MCAODC_03520 overlap by 4 nucleotides
MCAODC_03520 and MCAODC_03525 are separated by 335 nucleotides
MCAODC_03505: MCAODC_03505 - CPS-53 (KpLE1) prophage protein, at 706,063 to 706,449
_03505
MCAODC_03510: yfdR - 5'-deoxynucleotidase, at 706,577 to 707,113
yfdR
MCAODC_03515: MCAODC_03515 - Eae protein, at 707,104 to 707,454
_03515
MCAODC_03520: MCAODC_03520 - SAM-dependent methyltransferase, at 707,451 to 707,735
_03520
MCAODC_03525: MCAODC_03525 - hypothetical protein, at 708,071 to 708,268
_03525
Group
Condition
MCAODC
_03505
MCAODC
_03510
MCAODC
_03515
MCAODC
_03520
MCAODC
_03525
yfdR
phage
WM_Bas09
-6.7
-0.3
-0.1
-0.1
+0.1
phage
Bas14
-3.4
-0.1
-0.3
+0.3
-0.2
phage
WM_Bas09
-1.1
-0.2
+0.0
-0.1
+0.0
carbon source
Sodium-DL-Lactate
-0.7
-0.0
-0.1
-0.1
-0.3
phage
TP9
+0.1
+0.4
-0.3
-0.9
-0.2
phage
WM_RB68
-0.6
-0.2
+0.1
-0.2
+0.1
no phage control
Control_ECRC101_WM
-0.5
-0.1
-0.0
-0.1
-0.0
phage
EV240
-0.5
+0.2
-0.2
+0.2
+0.0
phage
WM_Bas41
-0.2
-0.1
+0.0
+0.1
-0.1
phage
WM_EV240
-0.0
-0.2
+0.3
-0.3
+0.0
phage
Bas14
-0.1
-0.0
-0.1
+0.3
-0.1
carbon source
D-Glucose
+0.0
-0.1
+0.0
-0.1
+0.2
carbon source
L-Arabinose
+0.3
-0.1
-0.2
+0.2
-0.1
carbon source
L-Arabinose
+0.4
-0.4
+0.1
+0.2
-0.1
phage
WM_TP9
+0.2
-0.3
+0.1
+0.2
-0.1
phage
WM_EV240
+0.5
-0.2
+0.2
-0.2
-0.0
no phage control
Control_ECRC101_WM
+0.1
-0.1
+0.1
+0.2
+0.2
carbon source
D-Glucose
+0.4
-0.1
+0.0
+0.2
-0.1
phage
EV240
+0.6
+0.1
-0.2
-0.2
+0.2
carbon source
Sodium-DL-Lactate
+0.9
-0.2
+0.0
+0.1
-0.1
phage
Bas09
+0.6
+0.1
-0.2
+0.5
-0.1
carbon source
Casamino-acids
+1.1
-0.1
-0.1
+0.1
-0.1
phage
WM_Bas14
+0.6
+0.0
+0.3
+0.1
+0.0
phage
WM_TP9
+1.0
-0.3
+0.2
+0.2
-0.1
phage
Bas09
+1.0
-0.0
-0.1
+0.6
+0.0
carbon source
Casamino-acids
+1.3
-0.0
+0.3
-0.0
+0.3
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