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Gene
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Cofit
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
dsbD and yjdC are separated by 36 nucleotides
yjdC and Phe_trna are separated by 106 nucleotides
Phe_trna and cadC are separated by 616 nucleotides
cadC and cadB are separated by 365 nucleotides
MCAODC_02960: dsbD - protein-disulfide reductase DsbD, at 594,572 to 596,269
dsbD
MCAODC_02965: yjdC - transcriptional regulator, at 596,306 to 596,881
yjdC
MCAODC_02970: Phe_trna - tRNA-Phe(gaa), at 596,988 to 597,063
_trna
MCAODC_02975: cadC - lysine decarboxylation/transport transcriptional activator CadC, at 597,680 to 599,218
cadC
MCAODC_02980: cadB - cadaverine/lysine antiporter, at 599,584 to 600,918
cadB
Group
Condition
MCAODC
_02960
MCAODC
_02965
MCAODC
_02970
MCAODC
_02975
MCAODC
_02980
dsbD
yjdC
Phe_trna
cadC
cadB
carbon source
L-Arabinose
-0.1
-0.4
N.D.
-0.1
-0.2
phage
WM_TP9
-0.1
-0.2
N.D.
-0.1
-0.1
phage
WM_Bas09
+0.0
-0.3
N.D.
-0.0
-0.1
phage
WM_Bas41
+0.0
-0.3
N.D.
+0.1
-0.1
no phage control
Control_ECRC101_WM
-0.1
-0.3
N.D.
-0.0
+0.0
phage
WM_TP9
-0.0
-0.1
N.D.
+0.0
-0.1
phage
TP9
-0.0
-0.1
N.D.
-0.0
+0.0
carbon source
Sodium-DL-Lactate
-0.1
+0.0
N.D.
-0.1
+0.0
phage
WM_Bas14
-0.0
-0.3
N.D.
+0.1
+0.0
phage
WM_RB68
+0.0
-0.0
N.D.
-0.1
+0.0
carbon source
D-Glucose
-0.0
+0.1
N.D.
-0.1
-0.0
phage
WM_EV240
+0.1
-0.1
N.D.
-0.0
-0.0
carbon source
D-Glucose
-0.0
-0.1
N.D.
+0.1
+0.0
phage
Bas14
+0.1
-0.1
N.D.
-0.1
+0.1
carbon source
Sodium-DL-Lactate
-0.1
+0.2
N.D.
+0.1
-0.1
phage
Bas14
+0.0
+0.1
N.D.
-0.1
+0.1
phage
WM_EV240
+0.1
-0.0
N.D.
+0.2
-0.0
phage
Bas09
+0.1
+0.0
N.D.
+0.1
+0.1
carbon source
Casamino-acids
+0.0
-0.1
N.D.
+0.2
+0.1
phage
Bas09
+0.2
-0.0
N.D.
+0.2
+0.1
no phage control
Control_ECRC101_WM
-0.0
+0.3
N.D.
+0.1
+0.0
phage
WM_Bas09
-0.0
+0.3
N.D.
+0.1
+0.1
carbon source
L-Arabinose
-0.0
+0.5
N.D.
+0.1
-0.0
phage
EV240
+0.3
+0.4
N.D.
-0.0
-0.2
phage
EV240
+0.5
+0.0
N.D.
+0.0
+0.0
carbon source
Casamino-acids
-0.0
+0.0
N.D.
+0.4
+0.2
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