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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
ytfK and ytfJ are separated by 324 nucleotides
ytfJ and ytfI are separated by 62 nucleotides
ytfI and cysQ are separated by 211 nucleotides
cysQ and cpdB are separated by 189 nucleotides
MCAODC_02535: ytfK - Uncharacterized protein YtfK, at 518,809 to 519,015
ytfK
MCAODC_02540: ytfJ - Uncharacterized protein YtfJ, at 519,340 to 519,894
ytfJ
MCAODC_02545: ytfI - Uncharacterized protein YtfI, at 519,957 to 520,895
ytfI
MCAODC_02550: cysQ - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 521,107 to 521,847
cysQ
MCAODC_02560: cpdB - 2',3'-cyclic-nucleotide 2'-phosphodiesterase, at 522,037 to 523,980
cpdB
Group
Condition
MCAODC
_02535
MCAODC
_02540
MCAODC
_02545
MCAODC
_02550
MCAODC
_02560
ytfK
ytfJ
ytfI
cysQ
cpdB
phage
WM_TP9
+0.2
+0.1
-0.4
-4.9
+0.0
phage
WM_TP9
+0.2
+0.1
-0.2
-4.2
+0.0
phage
WM_Bas41
+0.2
-0.1
-0.4
-3.8
+0.1
carbon source
D-Glucose
+0.0
-0.2
+0.1
-3.6
-0.0
carbon source
L-Arabinose
+0.1
-0.1
+0.1
-3.6
-0.1
phage
WM_EV240
-0.2
+0.3
-0.1
-3.2
-0.0
no phage control
Control_ECRC101_WM
-0.1
+0.3
+0.1
-3.5
-0.0
carbon source
D-Glucose
-0.1
+0.1
+0.2
-3.1
-0.0
carbon source
L-Arabinose
+0.3
+0.5
-0.3
-3.2
-0.0
carbon source
Sodium-DL-Lactate
+0.3
-0.1
+0.1
-3.1
+0.0
carbon source
Sodium-DL-Lactate
+0.4
+0.2
-0.1
-3.1
+0.0
phage
WM_Bas09
-0.0
+0.2
-0.3
-2.4
+0.0
phage
WM_EV240
-0.2
+0.3
+0.0
-2.5
+0.0
phage
WM_Bas14
+0.1
+0.1
-0.0
-2.4
+0.0
no phage control
Control_ECRC101_WM
+0.1
-0.0
-0.3
-2.0
-0.0
phage
WM_Bas09
+0.0
+0.2
-0.0
-2.2
+0.0
phage
WM_RB68
+0.0
-0.2
-0.2
-1.1
+0.1
phage
EV240
+0.1
-0.0
-0.4
-0.5
+0.0
phage
EV240
+0.2
-0.5
+0.0
-0.4
-0.0
phage
Bas09
-0.2
+0.2
-0.1
-0.1
+0.1
phage
Bas09
+0.4
+0.0
-0.2
-0.3
+0.1
phage
TP9
-0.2
+0.4
+0.1
+0.2
+0.1
carbon source
Casamino-acids
+0.7
-0.2
+0.1
+0.1
+0.1
carbon source
Casamino-acids
+0.6
+0.2
-0.1
-0.0
+0.1
phage
Bas14
+0.5
+0.4
+0.2
+0.1
+0.1
phage
Bas14
+0.2
-0.0
+0.5
+0.6
+0.2
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