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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
argF and MCAODC_02345 are separated by 56 nucleotides
MCAODC_02345 and tabA are separated by 122 nucleotides
tabA and bdcR are separated by 144 nucleotides
bdcR and bdcA are separated by 70 nucleotides
MCAODC_02340: argF - ornithine carbamoyltransferase, at 480,310 to 481,314
argF
MCAODC_02345: MCAODC_02345 - Uncharacterized protein YjgL, at 481,371 to 483,107
_02345
MCAODC_02350: tabA - toxin-antitoxin biofilm protein TabA, at 483,230 to 483,682
tabA
MCAODC_02355: bdcR - HTH-type transcriptional repressor BdcR, at 483,827 to 484,420
bdcR
MCAODC_02360: bdcA - SDR family oxidoreductase, at 484,491 to 485,204
bdcA
Group
Condition
MCAODC
_02340
MCAODC
_02345
MCAODC
_02350
MCAODC
_02355
MCAODC
_02360
argF
tabA
bdcR
bdcA
carbon source
Sodium-DL-Lactate
-3.8
-0.3
-0.1
+0.0
-0.1
carbon source
Sodium-DL-Lactate
-3.8
+0.2
+0.1
+0.1
+0.0
carbon source
L-Arabinose
-3.4
+0.2
+0.1
+0.1
-0.2
carbon source
L-Arabinose
-3.3
-0.3
+0.2
+0.3
-0.1
carbon source
D-Glucose
-3.3
+0.1
+0.3
-0.0
+0.2
carbon source
D-Glucose
-2.5
+0.4
-0.1
-0.1
-0.0
no phage control
Control_ECRC101_WM
-1.4
-0.2
-0.1
-0.1
-0.1
phage
WM_Bas09
-1.8
-0.0
+0.2
+0.1
+0.0
phage
WM_Bas09
-1.3
+0.2
-0.3
-0.1
+0.0
phage
WM_TP9
-1.0
-0.1
+0.0
-0.3
-0.0
phage
WM_Bas14
-1.0
-0.0
+0.0
-0.3
+0.0
phage
WM_EV240
-1.2
+0.4
-0.0
-0.0
-0.1
phage
Bas14
+0.0
-0.7
+0.1
-0.2
-0.1
phage
WM_Bas41
-0.5
-0.1
+0.0
-0.1
-0.1
no phage control
Control_ECRC101_WM
-1.1
-0.0
+0.1
+0.1
+0.2
phage
WM_EV240
-0.2
+0.0
-0.1
+0.1
-0.3
carbon source
Casamino-acids
+0.2
-0.6
+0.0
-0.1
+0.2
phage
WM_TP9
-0.5
+0.2
+0.2
+0.0
-0.2
phage
EV240
-0.0
-0.2
+0.0
-0.1
-0.0
phage
TP9
+0.0
-0.1
-0.1
+0.0
-0.0
phage
WM_RB68
+0.1
-0.0
-0.1
-0.0
-0.0
phage
Bas14
-0.1
+0.3
-0.1
+0.1
-0.2
phage
EV240
-0.1
+0.2
-0.3
+0.1
+0.1
phage
Bas09
+0.1
-0.1
+0.2
-0.1
+0.0
phage
Bas09
-0.1
+0.1
+0.2
+0.2
+0.1
carbon source
Casamino-acids
+0.2
+0.8
-0.0
+0.2
+0.0
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