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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
caiE and caiF are separated by 118 nucleotides
caiF and MCAODC_01450 are separated by 34 nucleotides
MCAODC_01450 and carB are separated by 7 nucleotides
carB and carA are separated by 17 nucleotides
MCAODC_01440: caiE - carnitine operon protein CaiE, at 277,413 to 278,003
caiE
MCAODC_01445: caiF - carnitine metabolism transcriptional regulator CaiF, at 278,122 to 278,517
caiF
MCAODC_01450: MCAODC_01450 - hypothetical protein, at 278,552 to 278,770
_01450
MCAODC_01455: carB - carbamoyl-phosphate synthase large subunit, at 278,778 to 281,999
carB
MCAODC_01460: carA - carbamoyl phosphate synthase small subunit, at 282,017 to 283,165
carA
Group
Condition
MCAODC
_01440
MCAODC
_01445
MCAODC
_01450
MCAODC
_01455
MCAODC
_01460
caiE
caiF
carB
carA
carbon source
Sodium-DL-Lactate
+0.1
+0.5
-0.3
-5.5
-6.2
carbon source
D-Glucose
+0.3
-0.2
+0.0
-6.4
-5.0
carbon source
Sodium-DL-Lactate
+0.2
-0.1
+0.3
-6.4
-5.1
carbon source
D-Glucose
+0.3
+0.2
-0.3
-5.3
-5.3
carbon source
Casamino-acids
+0.1
+0.3
+0.0
-5.4
-4.9
carbon source
L-Arabinose
+0.3
-0.0
-0.1
-3.6
-4.2
carbon source
Casamino-acids
-0.1
-0.0
+0.1
-4.1
-2.8
carbon source
L-Arabinose
+0.3
+0.3
+0.1
-3.4
-3.1
phage
WM_Bas09
+0.1
-0.2
+0.1
-1.8
-1.3
phage
WM_Bas09
-0.2
+0.1
-0.2
-1.3
-1.1
phage
WM_Bas41
-0.1
-0.5
-0.2
-0.9
-0.9
no phage control
Control_ECRC101_WM
+0.0
+0.1
+0.1
-1.3
-1.3
phage
WM_TP9
+0.0
-0.0
+0.0
-1.0
-1.0
phage
WM_Bas14
+0.1
+0.2
+0.2
-1.2
-1.0
no phage control
Control_ECRC101_WM
-0.3
+0.4
-0.1
-1.0
-0.8
phage
WM_EV240
+0.1
+0.4
-0.1
-1.1
-0.8
phage
EV240
-0.3
-0.2
-0.2
-0.1
-0.1
phage
Bas09
-0.2
-0.2
+0.1
+0.0
-0.3
phage
Bas09
-0.3
-0.4
+0.3
+0.1
-0.2
phage
Bas14
+0.1
+0.2
+0.0
-0.1
-0.1
phage
WM_TP9
+0.2
+0.6
+0.1
-0.5
-0.3
phage
EV240
+0.0
-0.1
+0.7
-0.1
-0.2
phage
WM_EV240
+0.3
+0.5
+0.2
-0.4
-0.4
phage
TP9
+0.2
-0.0
+0.3
-0.1
-0.1
phage
WM_RB68
+0.1
+0.1
-0.2
+0.1
+0.5
phage
Bas14
+0.2
+0.3
+0.4
-0.1
-0.0
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