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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
fixX and fixX overlap by 4 nucleotides
fixX and fixB are separated by 50 nucleotides
fixB and fixA are separated by 14 nucleotides
fixA and caiT are separated by 473 nucleotides
MCAODC_01395: fixX - ferredoxin-like protein FixX, at 267,032 to 267,319
fixX
MCAODC_01400: fixX - ferredoxin-like protein FixX, at 267,316 to 268,602
fixX
MCAODC_01405: fixB - electron transfer flavoprotein subunit alpha/FixB family protein, at 268,653 to 269,594
fixB
MCAODC_01410: fixA - Protein FixA, at 269,609 to 270,379
fixA
MCAODC_01415: caiT - L-carnitine/gamma-butyrobetaine antiporter, at 270,853 to 272,367
caiT
Group
Condition
MCAODC
_01395
MCAODC
_01400
MCAODC
_01405
MCAODC
_01410
MCAODC
_01415
fixX
fixX
fixB
fixA
caiT
carbon source
Casamino-acids
-0.6
-0.1
-0.3
-0.2
+0.2
carbon source
L-Arabinose
-0.8
+0.1
+0.1
-0.0
-0.1
carbon source
D-Glucose
-0.8
+0.1
+0.0
+0.1
-0.0
phage
WM_EV240
-0.4
-0.1
-0.1
+0.4
-0.2
carbon source
D-Glucose
-0.2
+0.2
-0.1
-0.1
-0.1
phage
WM_TP9
-0.2
-0.1
-0.1
+0.1
-0.0
phage
WM_RB68
+0.0
-0.2
-0.1
+0.1
-0.0
carbon source
L-Arabinose
-0.2
+0.0
-0.1
+0.2
-0.1
phage
Bas09
-0.2
-0.2
+0.1
+0.3
-0.3
phage
EV240
+0.3
-0.5
-0.0
+0.1
-0.0
no phage control
Control_ECRC101_WM
-0.1
+0.1
-0.0
-0.0
+0.0
phage
WM_EV240
+0.3
-0.1
-0.2
+0.1
-0.0
no phage control
Control_ECRC101_WM
+0.2
-0.0
-0.0
-0.1
+0.0
phage
TP9
+0.3
-0.1
+0.0
-0.2
+0.0
phage
Bas09
+0.2
+0.1
-0.2
-0.0
-0.0
carbon source
Sodium-DL-Lactate
+0.0
-0.1
+0.2
-0.0
+0.0
phage
WM_Bas09
-0.2
-0.0
+0.1
+0.2
+0.1
phage
Bas14
-0.0
+0.0
+0.0
+0.1
-0.0
carbon source
Sodium-DL-Lactate
-0.1
+0.1
-0.0
+0.2
-0.1
phage
WM_Bas09
+0.2
-0.1
-0.2
+0.2
-0.1
phage
WM_Bas41
+0.1
+0.0
-0.1
+0.2
-0.1
phage
WM_TP9
+0.1
+0.2
-0.1
+0.0
-0.0
phage
EV240
+0.4
-0.2
-0.1
-0.1
+0.0
carbon source
Casamino-acids
+0.2
+0.1
-0.1
+0.2
+0.1
phage
Bas14
+0.5
+0.1
-0.1
-0.1
+0.1
phage
WM_Bas14
+0.2
+0.1
+0.2
+0.2
-0.1
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MCAODC_01405
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