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Protein
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Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
espY1 and djlA are separated by 294 nucleotides
djlA and lptD are separated by 254 nucleotides
lptD and surA are separated by 52 nucleotides
surA and pdxA overlap by 1 nucleotides
MCAODC_01325: espY1 - Type III secretion system effector EspY1, at 253,009 to 253,746
espY1
MCAODC_01330: djlA - co-chaperone DjlA, at 254,041 to 254,856
djlA
MCAODC_01335: lptD - LPS assembly protein LptD, at 255,111 to 257,465
lptD
MCAODC_01340: surA - peptidylprolyl isomerase SurA, at 257,518 to 258,804
surA
MCAODC_01345: pdxA - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 258,804 to 259,793
pdxA
Group
Condition
MCAODC
_01325
MCAODC
_01330
MCAODC
_01335
MCAODC
_01340
MCAODC
_01345
espY1
djlA
lptD
surA
pdxA
carbon source
Casamino-acids
+0.1
+0.3
N.D.
-4.6
-3.3
carbon source
Casamino-acids
-0.4
+0.4
N.D.
-3.7
-2.6
carbon source
L-Arabinose
+0.2
+0.3
N.D.
-2.7
-2.7
carbon source
D-Glucose
+0.0
-0.0
N.D.
-2.0
-2.9
carbon source
Sodium-DL-Lactate
-0.0
-0.0
N.D.
-2.2
-2.5
carbon source
D-Glucose
-0.1
+0.1
N.D.
-1.7
-3.0
carbon source
Sodium-DL-Lactate
+0.1
-0.1
N.D.
-1.7
-2.6
carbon source
L-Arabinose
-0.0
+0.4
N.D.
-1.9
-2.9
phage
Bas14
+0.2
-0.3
N.D.
-2.3
+0.1
phage
WM_Bas41
+0.0
+0.0
N.D.
-2.0
+0.0
phage
Bas14
+0.4
-0.4
N.D.
-2.2
+0.4
phage
WM_RB68
-0.2
-0.0
N.D.
-1.4
+0.1
phage
Bas09
+0.0
-0.2
N.D.
-1.2
-0.1
phage
TP9
+0.0
-0.1
N.D.
-1.2
+0.2
phage
WM_EV240
-0.1
-0.4
N.D.
-0.2
-0.1
phage
WM_Bas09
+0.4
-0.0
N.D.
-1.3
+0.2
phage
Bas09
+0.1
-0.2
N.D.
-0.9
+0.2
phage
WM_Bas14
+0.1
+0.0
N.D.
-0.7
+0.0
phage
WM_Bas09
+0.2
+0.2
N.D.
-0.9
-0.0
phage
WM_TP9
-0.1
+0.2
N.D.
-0.4
-0.2
no phage control
Control_ECRC101_WM
+0.0
+0.3
N.D.
-0.5
-0.1
phage
WM_TP9
-0.0
+0.3
N.D.
-0.3
-0.0
phage
WM_EV240
-0.0
-0.1
N.D.
-0.0
+0.4
no phage control
Control_ECRC101_WM
+0.1
+0.2
N.D.
+0.1
+0.2
phage
EV240
+0.2
-0.1
N.D.
+1.2
-0.0
phage
EV240
+0.3
-0.2
N.D.
+1.3
+0.3
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