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Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
rapA and rluA are separated by 11 nucleotides
rluA and espY1 are separated by 417 nucleotides
espY1 and djlA are separated by 294 nucleotides
djlA and lptD are separated by 254 nucleotides
MCAODC_01315: rapA - RNA polymerase-associated protein RapA, at 249,014 to 251,920
rapA
MCAODC_01320: rluA - bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA, at 251,932 to 252,591
rluA
MCAODC_01325: espY1 - Type III secretion system effector EspY1, at 253,009 to 253,746
espY1
MCAODC_01330: djlA - co-chaperone DjlA, at 254,041 to 254,856
djlA
MCAODC_01335: lptD - LPS assembly protein LptD, at 255,111 to 257,465
lptD
Group
Condition
MCAODC
_01315
MCAODC
_01320
MCAODC
_01325
MCAODC
_01330
MCAODC
_01335
rapA
rluA
espY1
djlA
lptD
phage
Bas14
-2.0
-0.2
+0.2
-0.3
N.D.
phage
Bas14
-1.4
-0.3
+0.4
-0.4
N.D.
phage
Bas09
-0.6
+0.1
+0.0
-0.2
N.D.
phage
TP9
-0.5
-0.0
+0.0
-0.1
N.D.
no phage control
Control_ECRC101_WM
-0.3
-0.3
+0.1
+0.2
N.D.
phage
WM_RB68
+0.1
-0.1
-0.2
-0.0
N.D.
phage
WM_TP9
-0.1
-0.2
-0.1
+0.2
N.D.
phage
WM_TP9
-0.2
-0.3
-0.0
+0.3
N.D.
carbon source
Sodium-DL-Lactate
-0.4
+0.3
+0.1
-0.1
N.D.
no phage control
Control_ECRC101_WM
-0.2
-0.2
+0.0
+0.3
N.D.
phage
WM_Bas14
-0.2
-0.1
+0.1
+0.0
N.D.
carbon source
D-Glucose
-0.3
+0.2
-0.1
+0.1
N.D.
phage
WM_Bas41
-0.2
+0.1
+0.0
+0.0
N.D.
carbon source
Sodium-DL-Lactate
-0.2
+0.3
-0.0
-0.0
N.D.
carbon source
L-Arabinose
-0.2
-0.1
-0.0
+0.4
N.D.
carbon source
L-Arabinose
-0.3
+0.0
+0.2
+0.3
N.D.
carbon source
D-Glucose
-0.1
+0.3
+0.0
-0.0
N.D.
carbon source
Casamino-acids
+0.2
+0.0
-0.4
+0.4
N.D.
phage
WM_EV240
+0.8
-0.1
-0.1
-0.4
N.D.
phage
WM_Bas09
-0.2
+0.1
+0.2
+0.2
N.D.
phage
Bas09
+0.1
+0.3
+0.1
-0.2
N.D.
phage
WM_Bas09
-0.2
+0.2
+0.4
-0.0
N.D.
phage
WM_EV240
+0.7
+0.1
-0.0
-0.1
N.D.
carbon source
Casamino-acids
+0.2
+0.5
+0.1
+0.3
N.D.
phage
EV240
+2.2
+0.6
+0.2
-0.1
N.D.
phage
EV240
+2.4
+0.8
+0.3
-0.2
N.D.
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