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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
gcd and cueO are separated by 201 nucleotides
cueO and yacC are separated by 204 nucleotides
yacC and speE are separated by 105 nucleotides
speE and speD are separated by 15 nucleotides
MCAODC_00965: gcd - quinoprotein glucose dehydrogenase, at 171,613 to 174,003
gcd
MCAODC_00970: cueO - multicopper oxidase CueO, at 174,205 to 175,755
cueO
MCAODC_00975: yacC - YacC family pilotin-like protein, at 175,960 to 176,268
yacC
MCAODC_00980: speE - polyamine aminopropyltransferase, at 176,374 to 177,240
speE
MCAODC_00985: speD - adenosylmethionine decarboxylase, at 177,256 to 178,050
speD
Group
Condition
MCAODC
_00965
MCAODC
_00970
MCAODC
_00975
MCAODC
_00980
MCAODC
_00985
gcd
cueO
yacC
speE
speD
carbon source
L-Arabinose
-0.1
-0.0
+0.0
-0.3
-0.2
carbon source
D-Glucose
+0.2
+0.1
-1.0
+0.2
+0.1
phage
WM_TP9
-0.1
+0.1
-0.3
-0.1
-0.0
no phage control
Control_ECRC101_WM
+0.1
+0.1
-0.2
+0.0
-0.3
carbon source
Casamino-acids
+0.1
+0.1
-0.2
-0.1
-0.0
phage
WM_Bas14
-0.0
-0.0
-0.2
+0.1
+0.0
phage
WM_EV240
+0.0
+0.1
-0.8
+0.4
+0.0
phage
Bas09
-0.0
+0.1
-0.4
+0.2
+0.0
phage
WM_RB68
-0.2
-0.0
+0.0
-0.0
+0.0
phage
WM_Bas09
-0.0
+0.1
-0.1
+0.0
-0.1
phage
WM_EV240
+0.1
+0.1
-0.5
+0.3
-0.0
phage
Bas14
+0.1
-0.2
-0.2
+0.2
-0.0
carbon source
Casamino-acids
+0.1
+0.2
+0.4
-0.5
-0.1
no phage control
Control_ECRC101_WM
+0.0
-0.1
+0.0
+0.1
+0.0
carbon source
L-Arabinose
-0.0
+0.1
+0.3
+0.1
-0.3
phage
WM_Bas09
+0.0
+0.2
+0.1
+0.1
-0.2
phage
Bas09
-0.1
+0.1
+0.1
+0.2
-0.1
carbon source
Sodium-DL-Lactate
-0.0
+0.1
+0.2
-0.2
+0.1
phage
WM_TP9
+0.0
+0.1
-0.0
+0.2
+0.0
phage
WM_Bas41
-0.0
+0.2
+0.2
-0.0
-0.0
carbon source
Sodium-DL-Lactate
-0.0
+0.0
+0.3
+0.1
-0.1
carbon source
D-Glucose
-0.0
-0.1
-0.0
+0.3
+0.2
phage
TP9
-0.1
+0.0
+0.0
+0.6
-0.1
phage
Bas14
-0.1
+0.0
+0.3
+0.3
-0.1
phage
EV240
-0.3
+0.0
+0.6
+0.5
+0.1
phage
EV240
+0.1
-0.1
+0.4
+0.6
+0.2
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