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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
yafF and MCAODC_00340 are separated by 745 nucleotides
MCAODC_00340 and MCAODC_00345 are separated by 68 nucleotides
MCAODC_00345 and MCAODC_00350 are separated by 157 nucleotides
MCAODC_00350 and rhsA are separated by 139 nucleotides
MCAODC_00335: yafF - ISAs1 family transposase, at 40,806 to 41,942
yafF
MCAODC_00340: MCAODC_00340 - sel1 repeat family protein, at 42,688 to 43,275
_00340
MCAODC_00345: MCAODC_00345 - RHS repeat protein, at 43,344 to 44,876
_00345
MCAODC_00350: MCAODC_00350 - Ankyrin repeat containing virulence factor, at 45,034 to 45,750
_00350
MCAODC_00355: rhsA - type IV secretion protein Rhs, at 45,890 to 50,122
rhsA
Group
Condition
MCAODC
_00335
MCAODC
_00340
MCAODC
_00345
MCAODC
_00350
MCAODC
_00355
yafF
rhsA
carbon source
Casamino-acids
-0.9
+0.2
+0.1
-2.5
+0.2
carbon source
D-Glucose
-0.4
+0.6
+0.1
-2.1
+0.0
no phage control
Control_ECRC101_WM
+0.0
+0.2
+0.1
-1.9
-0.0
phage
WM_EV240
+0.2
+0.3
+0.1
-1.6
-0.1
phage
EV240
-0.4
-0.2
+0.0
-0.2
+0.0
phage
WM_Bas09
+0.5
+0.3
-0.2
-1.3
-0.1
phage
WM_EV240
+0.1
+0.1
+0.1
-1.0
+0.0
phage
WM_Bas09
-0.2
+0.2
+0.2
-0.9
+0.1
phage
Bas09
+0.2
+0.2
+0.2
-1.2
-0.1
carbon source
Sodium-DL-Lactate
-0.4
+0.4
+0.0
-0.2
-0.1
carbon source
Casamino-acids
+0.2
+0.1
+0.1
-0.6
+0.0
no phage control
Control_ECRC101_WM
-0.6
+0.5
+0.1
-0.0
+0.1
phage
Bas14
-0.6
-0.1
+0.0
+0.8
+0.1
phage
WM_RB68
+0.1
+0.3
-0.2
+0.1
-0.0
carbon source
Sodium-DL-Lactate
+0.6
+0.0
+0.1
-0.4
-0.0
phage
Bas14
+0.1
+0.2
-0.3
+0.5
+0.0
phage
WM_Bas14
+0.3
+0.2
+0.0
-0.0
+0.0
phage
WM_TP9
+0.5
+0.4
+0.2
-0.3
+0.1
phage
WM_Bas41
+0.5
+0.1
-0.0
+0.2
+0.1
phage
TP9
-0.9
-0.3
+0.3
+1.7
+0.1
carbon source
D-Glucose
+0.5
-0.0
+0.3
+0.0
+0.1
carbon source
L-Arabinose
-0.3
+0.3
+0.1
+1.1
+0.1
phage
EV240
-0.2
-0.2
+0.3
+1.8
-0.1
phage
WM_TP9
-0.2
+0.8
+0.3
+0.6
+0.2
carbon source
L-Arabinose
+0.5
+0.4
+0.4
+0.6
-0.2
phage
Bas09
+0.2
+0.3
+0.1
+1.9
+0.0
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