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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
MCAODC_00325 and rhsA overlap by 17 nucleotides
rhsA and yafF are separated by 2 nucleotides
yafF and MCAODC_00340 are separated by 745 nucleotides
MCAODC_00340 and MCAODC_00345 are separated by 68 nucleotides
MCAODC_00325: MCAODC_00325 - YdcD, at 38,889 to 39,059
_00325
MCAODC_00330: rhsA - RHS repeat protein, at 39,043 to 40,803
rhsA
MCAODC_00335: yafF - ISAs1 family transposase, at 40,806 to 41,942
yafF
MCAODC_00340: MCAODC_00340 - sel1 repeat family protein, at 42,688 to 43,275
_00340
MCAODC_00345: MCAODC_00345 - RHS repeat protein, at 43,344 to 44,876
_00345
Group
Condition
MCAODC
_00325
MCAODC
_00330
MCAODC
_00335
MCAODC
_00340
MCAODC
_00345
rhsA
yafF
phage
TP9
N.D.
+0.1
-0.9
-0.3
+0.3
phage
EV240
N.D.
+0.0
-0.4
-0.2
+0.0
carbon source
Casamino-acids
N.D.
+0.2
-0.9
+0.2
+0.1
phage
Bas14
N.D.
+0.3
-0.6
-0.1
+0.0
phage
EV240
N.D.
-0.0
-0.2
-0.2
+0.3
phage
Bas14
N.D.
-0.0
+0.1
+0.2
-0.3
no phage control
Control_ECRC101_WM
N.D.
-0.0
-0.6
+0.5
+0.1
carbon source
Sodium-DL-Lactate
N.D.
+0.1
-0.4
+0.4
+0.0
phage
WM_Bas09
N.D.
-0.1
-0.2
+0.2
+0.2
carbon source
L-Arabinose
N.D.
+0.1
-0.3
+0.3
+0.1
carbon source
D-Glucose
N.D.
-0.0
-0.4
+0.6
+0.1
phage
WM_RB68
N.D.
+0.0
+0.1
+0.3
-0.2
no phage control
Control_ECRC101_WM
N.D.
+0.0
+0.0
+0.2
+0.1
phage
WM_EV240
N.D.
+0.2
+0.1
+0.1
+0.1
phage
Bas09
N.D.
-0.1
+0.2
+0.3
+0.1
phage
WM_EV240
N.D.
-0.0
+0.2
+0.3
+0.1
phage
Bas09
N.D.
+0.0
+0.2
+0.2
+0.2
phage
WM_Bas14
N.D.
+0.1
+0.3
+0.2
+0.0
phage
WM_Bas41
N.D.
+0.2
+0.5
+0.1
-0.0
phage
WM_Bas09
N.D.
+0.1
+0.5
+0.3
-0.2
carbon source
Casamino-acids
N.D.
+0.3
+0.2
+0.1
+0.1
carbon source
Sodium-DL-Lactate
N.D.
+0.1
+0.6
+0.0
+0.1
phage
WM_TP9
N.D.
+0.1
-0.2
+0.8
+0.3
carbon source
D-Glucose
N.D.
+0.2
+0.5
-0.0
+0.3
phage
WM_TP9
N.D.
+0.2
+0.5
+0.4
+0.2
carbon source
L-Arabinose
N.D.
+0.2
+0.5
+0.4
+0.4
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