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Gene
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Cofit
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
tnp-IS3 and xerD are separated by 462 nucleotides
xerD and Thr_trna are separated by 14 nucleotides
Thr_trna and proA are separated by 114 nucleotides
proA and proB are separated by 11 nucleotides
MCAODC_00175: tnp-IS3 - IS3 family transposase, at 12,198 to 13,085
tnp-IS3
MCAODC_00180: xerD - Site-specific recombinase XerD, at 13,548 to 14,522
xerD
MCAODC_00185: Thr_trna - tRNA-Thr(cgt), at 14,537 to 14,612
_trna
MCAODC_00190: proA - glutamate-5-semialdehyde dehydrogenase, at 14,727 to 15,980
proA
MCAODC_00195: proB - Glutamate 5-kinase, at 15,992 to 17,095
proB
Group
Condition
MCAODC
_00175
MCAODC
_00180
MCAODC
_00185
MCAODC
_00190
MCAODC
_00195
tnp-IS3
xerD
Thr_trna
proA
proB
carbon source
Sodium-DL-Lactate
N.D.
+0.0
-0.5
-4.3
-5.1
carbon source
D-Glucose
N.D.
+0.1
-0.0
-4.6
-4.2
carbon source
L-Arabinose
N.D.
+0.1
-2.3
-3.4
-3.0
carbon source
D-Glucose
N.D.
+0.1
+0.6
-3.9
-5.0
carbon source
Sodium-DL-Lactate
N.D.
+0.2
+0.8
-5.1
-3.2
carbon source
L-Arabinose
N.D.
+0.1
-0.5
-3.6
-2.5
carbon source
Casamino-acids
N.D.
-0.2
-4.7
-0.3
-0.1
phage
WM_Bas09
N.D.
-0.1
-3.0
+0.0
-0.4
phage
EV240
N.D.
-0.0
-2.6
-0.2
-0.5
phage
TP9
N.D.
-0.1
-2.5
-0.3
+0.3
carbon source
Casamino-acids
N.D.
-0.0
-2.0
-0.2
+0.0
no phage control
Control_ECRC101_WM
N.D.
-0.1
-0.5
-0.6
-0.6
phage
WM_Bas09
N.D.
+0.2
-1.8
-0.0
-0.1
no phage control
Control_ECRC101_WM
N.D.
+0.1
-0.5
-0.7
-0.7
phage
Bas09
N.D.
-0.3
-1.0
-0.2
-0.1
phage
WM_Bas41
N.D.
-0.1
-0.7
-0.5
-0.3
phage
WM_TP9
N.D.
+0.0
-0.9
-0.4
-0.2
phage
WM_RB68
N.D.
+0.1
-1.1
-0.1
-0.2
phage
Bas14
N.D.
-0.3
+0.4
-0.4
-0.7
phage
Bas09
N.D.
+0.1
+0.1
-0.5
-0.1
phage
WM_Bas14
N.D.
+0.1
-0.3
+0.1
-0.2
phage
WM_TP9
N.D.
+0.2
-0.3
+0.1
-0.1
phage
WM_EV240
N.D.
-0.0
+0.3
-0.1
-0.2
phage
Bas14
N.D.
+0.1
+0.6
-0.6
+0.1
phage
EV240
N.D.
-0.1
+0.2
-0.2
+0.5
phage
WM_EV240
N.D.
-0.2
+0.6
+0.2
+0.4
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