Fitness for 5 genes in Erwinia tracheiphila SCR3

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500 ntsctI and sctF are separated by 54 nucleotidessctF and LU632_RS00440 are separated by 3 nucleotidesLU632_RS00440 and LU632_RS00445 are separated by 300 nucleotidesLU632_RS00445 and sctC overlap by 8 nucleotides LU632_RS00430: sctI - type III secretion system inner rod subunit SctI, at 88,942 to 89,265 sctI LU632_RS00435: sctF - type III secretion system needle filament subunit SctF, at 89,320 to 89,592 sctF LU632_RS00440: LU632_RS00440 - PrgH/EprH family type III secretion apparatus protein, at 89,596 to 90,849 _RS00440 LU632_RS00445: LU632_RS00445 - helix-turn-helix domain-containing protein, at 91,150 to 92,028 _RS00445 LU632_RS00450: sctC - type III secretion system outer membrane ring subunit SctC, at 92,021 to 93,793 sctC
Group Condition LU632_RS00430 LU632_RS00435 LU632_RS00440 LU632_RS00445 LU632_RS00450
sctI sctF sctC
in planta plant=Squash; plant sample=QP3; plant location=NA N.D. -1.7 -0.3 -0.2 +0.1
in planta plant=Squash; plant sample=QP1; plant location=NA N.D. -1.2 -0.8 -0.2 -0.0
in planta plant=Cucumber; plant sample=CP3; plant location=NA N.D. -1.9 -0.0 +0.0 -0.0
in planta Experiment:TE, Melon 2 Main Stem (TE-S-M2-MS) N.D. -0.2 -0.8 -0.6 -0.0
in planta Experiment:TE, Melon 3 Main Stem (TE-S-M3-MS) N.D. -0.6 -0.5 -0.1 +0.0
in planta plant=Squash; plant sample=QP2; plant location=NA N.D. -1.0 -0.0 -0.1 -0.1
in planta Experiment:PE, population C11, passage 1 (PE-S-C11-P1) N.D. -1.1 +0.3 -0.2 -0.1
cucxylem CucXylem N.D. -0.6 -0.3 -0.2 -0.0
in planta Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2) N.D. -0.9 -0.1 +0.0 +0.1
in planta Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2) N.D. -1.1 +0.4 +0.0 +0.0
in planta plant=Melon; plant sample=MP3; plant location=NA N.D. -0.8 +0.1 +0.1 +0.0
hbm-glucose HBM-Glucose N.D. -0.8 -0.3 +0.5 +0.3
melonxylem MelonXylem N.D. -0.1 +0.3 -0.3 -0.1
in planta plant=Melon; plant sample=M2; plant location=P2 N.D. -0.6 -0.1 +0.5 +0.3
in planta Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1) N.D. +0.3 -0.4 +0.0 +0.2
in planta plant=Melon; plant sample=M4; plant location=P2 N.D. +0.7 +0.1 -0.5 +0.1
in planta plant=Melon; plant sample=MP2; plant location=NA N.D. -0.8 +0.7 +0.5 +0.1
hbm-sucrose HBM-Sucrose N.D. -0.3 +0.2 +0.3 +0.3
cucxylem CucXylem N.D. +0.6 +0.1 +0.0 -0.1
hbm-glucose HBM-Glucose N.D. +0.2 -0.2 +0.4 +0.3
in planta Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2) N.D. +0.9 +0.3 -0.4 -0.0
mjm9 MJM9 N.D. -0.1 +0.3 +0.4 +0.2
in planta plant=Melon; plant sample=M5; plant location=P2 N.D. -0.6 +0.6 +0.8 +0.2
in planta Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2) N.D. +1.1 -0.1 +0.0 +0.0
mjm9 MJM9 N.D. +0.4 +0.3 +0.4 +0.3
in planta Experiment:TE, Melon 3 Petiole 2 (TE-S-M3-P2) N.D. +1.1 -0.0 +0.2 +0.1
hbm-sucrose HBM-Sucrose N.D. +0.6 -0.0 +0.5 +0.3
in planta Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS) N.D. +1.8 +0.3 +0.1 -0.1
in planta Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1) N.D. +1.1 +0.5 +0.8 +0.2
in planta Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) N.D. +2.8 +0.5 +0.3 +0.0
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