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Fitness for 5 genes in
Rhodanobacter sp000427505 FW510-R12
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK53_RS17145 and LRK53_RS17150 are separated by 148 nucleotides
LRK53_RS17150 and LRK53_RS17155 are separated by 143 nucleotides
LRK53_RS17155 and LRK53_RS17160 are separated by 101 nucleotides
LRK53_RS17160 and LRK53_RS17165 are separated by 8 nucleotides
LRK53_RS17145: LRK53_RS17145 - type I glyceraldehyde-3-phosphate dehydrogenase, at 3,771,689 to 3,772,690
_RS17145
LRK53_RS17150: LRK53_RS17150 - ferredoxin family protein, at 3,772,839 to 3,773,165
_RS17150
LRK53_RS17155: LRK53_RS17155 - azurin, at 3,773,309 to 3,773,755
_RS17155
LRK53_RS17160: LRK53_RS17160 - group III truncated hemoglobin, at 3,773,857 to 3,774,267
_RS17160
LRK53_RS17165: LRK53_RS17165 - thiol peroxidase, at 3,774,276 to 3,774,776
_RS17165
Group
Condition
LRK53
_RS17145
LRK53
_RS17150
LRK53
_RS17155
LRK53
_RS17160
LRK53
_RS17165
biofilm assay; planktonic sample
planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
-1.6
-0.1
-0.2
-0.2
-0.7
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.9
-1.2
+0.4
+0.0
-0.6
biofilm assay; biofilm sample
biofilm; Day1; NLDM; Aluminum chloride 1mM
-1.4
-0.3
+0.1
-0.2
-0.5
nutrient
defined media with D-Glucose
-2.0
+0.2
-0.1
-0.2
-0.0
nutrient
defined media with D-Glucose
-1.9
-0.4
+0.1
-0.1
+0.2
biofilm assay; biofilm sample
biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
-0.3
-1.2
+0.0
-0.2
-0.1
nutrient
defined media with L-Serine
-1.7
-0.4
+0.1
-0.1
+0.2
nutrient
defined media with L-Serine
-2.0
+0.5
-0.0
+0.0
-0.1
biofilm assay; planktonic sample
Planktonic; Day2; SGW; pH7
+0.2
-1.4
+0.1
+0.2
-0.5
nldm low p
NLDM_defined low phosphorus; midlog
-1.0
-0.4
+0.1
+0.1
-0.1
biofilm assay; biofilm sample
biofilm; Day1; NLDM;
-0.7
-0.8
-0.0
+0.2
-0.0
nldm low iron
NLDM_defined low iron; midlog
-0.8
-0.4
+0.1
-0.0
-0.0
biofilm assay; biofilm sample
Biofilm; Day2; SGW; Manganese (II) chloride tetrahydrate 10mM
-0.4
-0.2
+0.0
-0.3
-0.2
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Aluminum chloride 1mM
-0.5
+0.2
-0.4
+0.2
-0.6
biofilm assay; planktonic sample
planktonic; Day1; NLDM;
-1.2
+0.2
-0.2
+0.1
+0.2
biofilm assay; biofilm sample
biofilm; Day2; NLDM;
-0.4
-0.1
-0.2
+0.2
-0.4
stress
R2A_PIPES with Aluminum chloride 1.125 mM
-0.6
-0.3
+0.2
-0.2
-0.0
nldm low iron
NLDM_defined low iron; midlog
-0.6
-0.4
+0.1
+0.1
-0.1
stress
R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM
-0.2
-0.7
+0.1
+0.2
+0.0
nutrient
defined media with 20AA_mix
-1.0
+0.0
+0.1
+0.2
-0.0
biofilm assay; biofilm sample
biofilm; Day1; NLDM;
-0.9
+0.3
+0.1
+0.0
+0.0
biofilm assay; biofilm sample
Biofilm; Day2; SGW; pH7
-0.9
+0.6
-0.0
+0.1
-0.1
nutrient
defined media with 20AA_mix
-0.5
+0.5
-0.2
-0.1
+0.1
biofilm assay; biofilm sample
biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
-0.6
+0.9
+0.2
-0.3
-0.1
biofilm assay; biofilm sample
Biofilm; Day2; SGW; pH7
-0.4
+0.6
+0.1
-0.1
-0.1
pH
pH4.5
+0.3
-0.7
+0.5
-0.0
+0.0
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
-0.1
+0.3
+0.2
+0.2
-0.4
stress
R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM
-0.0
+0.8
-0.0
+0.1
-0.6
no stress control
R2A_PIPES no stress control
+0.5
+0.3
+0.2
+0.2
-0.2
stress
R2A_PIPES with Nickel (II) chloride 848 uM
-0.2
-0.0
+2.1
+0.1
-0.0
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