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Protein
Homologs
Fitness for 5 genes in
Rhodanobacter sp000427505 FW510-R12
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK53_RS15820 and LRK53_RS15825 are separated by 56 nucleotides
LRK53_RS15825 and LRK53_RS15830 are separated by 104 nucleotides
LRK53_RS15830 and LRK53_RS15835 are separated by 160 nucleotides
LRK53_RS15835 and LRK53_RS15840 are separated by 36 nucleotides
LRK53_RS15820: LRK53_RS15820 - metal/formaldehyde-sensitive transcriptional repressor, at 3,458,548 to 3,458,817
_RS15820
LRK53_RS15825: LRK53_RS15825 - CDF family Co(II)/Ni(II) efflux transporter DmeF, at 3,458,874 to 3,459,839
_RS15825
LRK53_RS15830: LRK53_RS15830 - ATP-dependent DNA helicase, at 3,459,944 to 3,461,890
_RS15830
LRK53_RS15835: LRK53_RS15835 - MAPEG family protein, at 3,462,051 to 3,462,440
_RS15835
LRK53_RS15840: LRK53_RS15840 - tetratricopeptide repeat protein, at 3,462,477 to 3,463,001
_RS15840
Group
Condition
LRK53
_RS15820
LRK53
_RS15825
LRK53
_RS15830
LRK53
_RS15835
LRK53
_RS15840
stress
R2A_PIPES with Cobalt chloride 1024 uM
-0.3
-3.2
+0.0
-0.1
-0.6
biofilm assay; planktonic sample
Planktonic; Day2; SGW; pH7
-2.0
-0.1
-0.2
-0.9
-0.5
biofilm assay; biofilm sample
biofilm; Day1; NLDM;
-2.3
-0.3
-0.1
+0.0
-0.3
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Aluminum chloride 1mM
-2.4
-0.2
-0.1
+0.3
-0.4
biofilm assay; biofilm sample
biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
-2.0
-0.0
+0.0
+0.4
-1.2
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-2.2
-0.0
-0.0
+0.0
-0.0
biofilm assay; planktonic sample
planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
-0.7
-0.1
-0.0
-0.5
-0.8
stress
R2A_PIPES with Cobalt chloride 1024 uM
+1.4
-3.1
-0.0
+0.0
+0.2
biofilm assay; biofilm sample
biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
-1.5
-0.1
+0.1
-0.2
+0.3
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Aluminum chloride 1mM
-0.9
-0.1
-0.2
-0.3
+0.3
stress
R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM
+0.3
+0.1
-0.0
-0.7
-0.7
stress
R2A_PIPES with Cobalt chloride 512 uM
+1.5
-1.1
-0.1
-0.3
-0.5
pH
pH4.5
+0.6
+0.1
-0.1
-0.5
-0.6
biofilm assay; biofilm sample
biofilm; Day1; NLDM;
+0.8
-0.1
-0.2
-0.1
-0.5
stress
R2A_PIPES with Cobalt chloride 512 uM
+1.4
-0.9
+0.1
-0.0
-0.4
stress
R2A_PIPES with Cadmium chloride hemipentahydrate 128 uM
+1.1
+0.0
+0.1
-0.2
-0.6
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
+1.1
+0.0
-0.1
-0.5
-0.2
pH
pH5
+1.2
-0.1
+0.0
-0.3
-0.4
biofilm assay; biofilm sample
biofilm; Day2; NLDM;
+1.4
-0.4
+0.0
+0.3
-0.8
stress
R2A_PIPES with Cadmium chloride hemipentahydrate 128 uM
+1.0
+0.2
-0.1
-0.6
-0.0
pH
pH4
+1.0
+0.1
+0.1
-0.1
-0.5
pH
pH4.8
+1.2
+0.1
-0.0
-0.2
-0.2
stress
R2A_PIPES with Aluminum chloride 1.125 mM
+1.5
+0.1
+0.0
-0.4
-0.0
nutrient
defined media with 20AA_mix
+1.5
+0.1
+0.1
+0.0
-0.5
stress
R2A_PIPES with Zinc chloride 5120 uM
+2.1
-0.1
-0.0
-0.5
-0.1
nutrient
defined media with L-Serine
+2.0
+0.0
-0.1
+0.1
-0.5
stress
R2A_PIPES with Nickel (II) chloride 848 uM
+2.1
-0.0
-0.1
+0.0
+0.1
nutrient
defined media with L-Serine
+2.8
-0.0
+0.1
-0.2
-0.5
no stress control
R2A_PIPES no stress control
+2.1
+0.2
+0.3
-0.3
+0.0
nutrient
defined media with D-Glucose
+2.4
+0.1
+0.1
+0.0
-0.2
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