Fitness for 5 genes in Rhodanobacter sp000427505 FW510-R12

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500 ntLRK53_RS03110 and LRK53_RS03115 overlap by 4 nucleotidesLRK53_RS03115 and LRK53_RS03120 overlap by 4 nucleotidesLRK53_RS03120 and LRK53_RS03125 are separated by 108 nucleotidesLRK53_RS03125 and LRK53_RS03130 are separated by 10 nucleotides LRK53_RS03110: LRK53_RS03110 - 3-isopropylmalate dehydratase large subunit, at 726,163 to 727,575 _RS03110 LRK53_RS03115: LRK53_RS03115 - branched-chain amino acid transaminase, at 727,572 to 728,573 _RS03115 LRK53_RS03120: LRK53_RS03120 - 2-isopropylmalate synthase, at 728,570 to 730,204 _RS03120 LRK53_RS03125: LRK53_RS03125 - hypothetical protein, at 730,313 to 730,450 _RS03125 LRK53_RS03130: LRK53_RS03130 - TetR/AcrR family transcriptional regulator, at 730,461 to 731,168 _RS03130
Group Condition LRK53_RS03110 LRK53_RS03115 LRK53_RS03120 LRK53_RS03125 LRK53_RS03130
nutrient defined media with L-Serine -2.7 -2.8 -3.2 -2.4 +0.1
nutrient defined media with L-Serine -2.5 -2.6 -3.1 -2.3 -0.2
nutrient defined media with D-Glucose -2.7 -2.3 -3.3 -2.4 +0.0
nutrient defined media with D-Glucose -2.5 -2.6 -2.9 -2.4 -0.0
nutrient defined media with 20AA_mix -1.2 -1.0 -1.7 -1.0 -0.3
nldm low iron NLDM_defined low iron; midlog -1.2 -1.3 -1.2 -1.2 -0.2
nldm control NLDM_defined; midlog -0.8 -1.4 -1.5 -1.3 -0.0
nldm control NLDM_defined; midlog -1.0 -1.0 -1.4 -1.1 -0.2
nutrient defined media with 20AA_mix -1.3 -1.0 -0.9 -1.0 -0.3
nldm low iron NLDM_defined low iron; midlog -1.1 -1.2 -1.3 -0.8 -0.1
nldm low p NLDM_defined low phosphorus; midlog -1.1 -1.3 -0.7 -1.0 -0.3
nldm low iron NLDM_defined low iron; midlog -0.6 -1.7 -0.5 -1.1 -0.2
nldm low p NLDM_defined low phosphorus; midlog -0.7 -1.2 -0.7 -0.8 -0.2
biofilm assay; biofilm sample biofilm; Day2; NLDM; -0.5 -0.8 -0.6 -0.8 +0.3
biofilm assay; biofilm sample biofilm; Day2; NLDM; -0.2 -0.7 -1.2 -0.3 -0.0
biofilm assay; biofilm sample biofilm; Day1; NLDM; +0.1 -0.8 -1.2 -0.5 +0.1
biofilm assay; planktonic sample planktonic; Day1; NLDM; +0.1 -0.8 -0.5 -0.4 +0.0
stress R2A_PIPES with Cadmium chloride hemipentahydrate 128 uM +0.1 -0.4 -0.7 -0.0 -0.2
biofilm assay; biofilm sample biofilm; Day1; NLDM; -0.4 -0.3 -0.4 -0.2 +0.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; +0.1 -0.5 -0.5 -0.3 -0.0
pH pH4.8 +0.1 -0.3 -0.6 -0.0 -0.4
biofilm assay; biofilm sample biofilm; Day1; NLDM; -0.3 -0.2 -0.3 -0.3 +0.0
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.3 -0.2 -0.7 +0.1 -0.1
pH pH5 -0.5 -0.2 -0.1 -0.1 -0.2
stress R2A_PIPES with Aluminum chloride 1.125 mM -0.4 -0.1 -0.2 +0.2 -0.4
pH pH4.3 +0.0 -0.2 -0.5 +0.2 -0.2
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.7 -0.1 -0.1 -0.1 +0.5
biofilm assay; planktonic sample planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.5 +0.3 -0.1 -0.2 +0.1
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.0 -0.1 -0.4 +0.1 +0.5
biofilm assay; biofilm sample Biofilm; Day2; SGW; pH7 +0.5 -0.1 +0.1 +0.2 +0.2
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