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Fitness for 5 genes in
Rhodanobacter sp000427505 FW510-R12
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK53_RS03110 and LRK53_RS03115 overlap by 4 nucleotides
LRK53_RS03115 and LRK53_RS03120 overlap by 4 nucleotides
LRK53_RS03120 and LRK53_RS03125 are separated by 108 nucleotides
LRK53_RS03125 and LRK53_RS03130 are separated by 10 nucleotides
LRK53_RS03110: LRK53_RS03110 - 3-isopropylmalate dehydratase large subunit, at 726,163 to 727,575
_RS03110
LRK53_RS03115: LRK53_RS03115 - branched-chain amino acid transaminase, at 727,572 to 728,573
_RS03115
LRK53_RS03120: LRK53_RS03120 - 2-isopropylmalate synthase, at 728,570 to 730,204
_RS03120
LRK53_RS03125: LRK53_RS03125 - hypothetical protein, at 730,313 to 730,450
_RS03125
LRK53_RS03130: LRK53_RS03130 - TetR/AcrR family transcriptional regulator, at 730,461 to 731,168
_RS03130
Group
Condition
LRK53
_RS03110
LRK53
_RS03115
LRK53
_RS03120
LRK53
_RS03125
LRK53
_RS03130
nutrient
defined media with L-Serine
-2.7
-2.8
-3.2
-2.4
+0.1
nutrient
defined media with L-Serine
-2.5
-2.6
-3.1
-2.3
-0.2
nutrient
defined media with D-Glucose
-2.7
-2.3
-3.3
-2.4
+0.0
nutrient
defined media with D-Glucose
-2.5
-2.6
-2.9
-2.4
-0.0
nutrient
defined media with 20AA_mix
-1.2
-1.0
-1.7
-1.0
-0.3
nldm low iron
NLDM_defined low iron; midlog
-1.2
-1.3
-1.2
-1.2
-0.2
nldm control
NLDM_defined; midlog
-0.8
-1.4
-1.5
-1.3
-0.0
nldm control
NLDM_defined; midlog
-1.0
-1.0
-1.4
-1.1
-0.2
nutrient
defined media with 20AA_mix
-1.3
-1.0
-0.9
-1.0
-0.3
nldm low iron
NLDM_defined low iron; midlog
-1.1
-1.2
-1.3
-0.8
-0.1
nldm low p
NLDM_defined low phosphorus; midlog
-1.1
-1.3
-0.7
-1.0
-0.3
nldm low iron
NLDM_defined low iron; midlog
-0.6
-1.7
-0.5
-1.1
-0.2
nldm low p
NLDM_defined low phosphorus; midlog
-0.7
-1.2
-0.7
-0.8
-0.2
biofilm assay; biofilm sample
biofilm; Day2; NLDM;
-0.5
-0.8
-0.6
-0.8
+0.3
biofilm assay; biofilm sample
biofilm; Day2; NLDM;
-0.2
-0.7
-1.2
-0.3
-0.0
biofilm assay; biofilm sample
biofilm; Day1; NLDM;
+0.1
-0.8
-1.2
-0.5
+0.1
biofilm assay; planktonic sample
planktonic; Day1; NLDM;
+0.1
-0.8
-0.5
-0.4
+0.0
stress
R2A_PIPES with Cadmium chloride hemipentahydrate 128 uM
+0.1
-0.4
-0.7
-0.0
-0.2
biofilm assay; biofilm sample
biofilm; Day1; NLDM;
-0.4
-0.3
-0.4
-0.2
+0.1
biofilm assay; biofilm sample
biofilm; Day2; NLDM;
+0.1
-0.5
-0.5
-0.3
-0.0
pH
pH4.8
+0.1
-0.3
-0.6
-0.0
-0.4
biofilm assay; biofilm sample
biofilm; Day1; NLDM;
-0.3
-0.2
-0.3
-0.3
+0.0
biofilm assay; biofilm sample
biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
-0.3
-0.2
-0.7
+0.1
-0.1
pH
pH5
-0.5
-0.2
-0.1
-0.1
-0.2
stress
R2A_PIPES with Aluminum chloride 1.125 mM
-0.4
-0.1
-0.2
+0.2
-0.4
pH
pH4.3
+0.0
-0.2
-0.5
+0.2
-0.2
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.7
-0.1
-0.1
-0.1
+0.5
biofilm assay; planktonic sample
planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
-0.5
+0.3
-0.1
-0.2
+0.1
biofilm assay; biofilm sample
biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
-0.0
-0.1
-0.4
+0.1
+0.5
biofilm assay; biofilm sample
Biofilm; Day2; SGW; pH7
+0.5
-0.1
+0.1
+0.2
+0.2
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