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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC98
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
ypdK and lpxP are separated by 370 nucleotides
lpxP and yfdY are separated by 352 nucleotides
yfdY and JDDGAC_26355 are separated by 76 nucleotides
JDDGAC_26355 and yfdX are separated by 295 nucleotides
JDDGAC_26340: ypdK - membrane protein YpdK, at 5,037,051 to 5,037,107
ypdK
JDDGAC_26345: lpxP - kdo(2)-lipid IV(A) palmitoleoyltransferase, at 5,037,478 to 5,038,398
lpxP
JDDGAC_26350: yfdY - Uncharacterized protein YfdY, at 5,038,751 to 5,038,993
yfdY
JDDGAC_26355: JDDGAC_26355 - Uncharacterized lipoprotein YpdI, at 5,039,070 to 5,039,345
_26355
JDDGAC_26360: yfdX - Protein YfdX, at 5,039,641 to 5,040,276
yfdX
Group
Condition
JDDGAC
_26340
JDDGAC
_26345
JDDGAC
_26350
JDDGAC
_26355
JDDGAC
_26360
ypdK
lpxP
yfdY
yfdX
phage
WM_Bas09
-0.8
+0.1
-1.1
-0.6
+0.1
phage
WM_JK32
-0.8
-0.2
-1.0
-0.1
+0.0
phage
WM_Bas31
-0.7
-0.1
+0.2
-0.5
-0.4
no phage control
Control_ECRC98_WM
-2.0
-0.0
+0.3
-0.1
+0.3
phage
WM_Bas09
+0.1
+0.2
-0.7
+0.2
-0.8
phage
WM_JK32
-0.3
+0.0
+0.2
-0.1
-0.1
phage
WM_TP12
-0.0
-0.0
-0.2
+0.1
+0.2
phage
WM_TP12
+0.0
-0.2
+0.8
-0.3
-0.2
phage
WM_JK45
-0.2
+0.0
+0.1
-0.0
+0.4
phage
WM_K30
+0.1
+0.1
+0.3
+0.4
-0.2
phage
WM_K30
+0.2
+0.3
+0.3
-0.1
-0.1
no phage control
Control_ECRC98_WM
+0.4
+0.2
+0.4
-0.4
+0.2
no phage control
Control_ECRC98_WM
+0.7
+0.2
-0.0
-0.2
+0.2
phage
WM_JK45
+0.5
+0.2
+0.0
+0.5
+0.2
no phage control
Control_ECRC98_WM
+0.8
+0.2
-0.0
+0.6
+0.1
phage
WM_EV240
-0.2
+0.2
+1.1
+0.4
+0.2
phage
WM_EV240
+0.1
-0.3
+0.7
-0.0
+1.3
phage
WM_Bas31
+1.1
-0.1
+1.0
-0.2
+0.2
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