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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC98
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
rpnA and feoC are separated by 202 nucleotides
feoC and feoB overlap by 1 nucleotides
feoB and feoA are separated by 16 nucleotides
feoA and yhgF are separated by 437 nucleotides
JDDGAC_20635: rpnA - recombination-promoting nuclease RpnA, at 3,961,784 to 3,962,662
rpnA
JDDGAC_20640: feoC - [Fe-S]-dependent transcriptional repressor FeoC, at 3,962,865 to 3,963,101
feoC
JDDGAC_20645: feoB - Fe(2+) transporter permease subunit FeoB, at 3,963,101 to 3,965,422
feoB
JDDGAC_20650: feoA - ferrous iron transporter A, at 3,965,439 to 3,965,666
feoA
JDDGAC_20655: yhgF - Protein YhgF, at 3,966,104 to 3,968,425
yhgF
Group
Condition
JDDGAC
_20635
JDDGAC
_20640
JDDGAC
_20645
JDDGAC
_20650
JDDGAC
_20655
rpnA
feoC
feoB
feoA
yhgF
phage
WM_Bas09
-0.2
-1.4
-0.2
-0.9
+0.0
phage
WM_EV240
+0.1
-1.4
-0.7
-0.2
+0.1
phage
WM_JK45
-0.1
-1.0
-0.3
-0.4
-0.3
phage
WM_Bas31
+0.0
-0.4
-0.3
-1.1
-0.2
phage
WM_JK45
-0.1
-0.2
-0.3
-0.9
-0.2
phage
WM_JK32
-0.0
-0.7
-0.2
-0.1
-0.2
phage
WM_JK32
-0.1
-0.3
-0.2
-0.3
-0.2
phage
WM_Bas09
+0.0
-0.7
-0.0
-0.2
-0.1
phage
WM_TP12
-0.1
-0.1
-0.3
-0.3
-0.2
no phage control
Control_ECRC98_WM
-0.2
-0.2
+0.1
-0.3
-0.2
phage
WM_TP12
-0.0
-0.0
-0.1
-0.3
-0.0
no phage control
Control_ECRC98_WM
-0.0
+0.6
-0.1
-0.6
-0.3
no phage control
Control_ECRC98_WM
+0.0
-0.3
-0.1
+0.1
-0.1
phage
WM_Bas31
-0.2
+0.5
-0.2
-0.2
-0.1
no phage control
Control_ECRC98_WM
+0.0
+0.4
+0.0
-0.4
-0.3
phage
WM_K30
-0.1
+0.1
-0.0
-0.2
-0.0
phage
WM_EV240
-0.1
+1.2
-1.0
-0.4
+0.2
phage
WM_K30
-0.2
+0.6
-0.0
+0.2
-0.1
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