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Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC98
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500 nt
rpmH and ysdD are separated by 229 nucleotides
ysdD and dnaA are separated by 296 nucleotides
dnaA and dnaN are separated by 4 nucleotides
dnaN and recF overlap by 1 nucleotides
JDDGAC_18620: rpmH - 50S ribosomal protein L34, at 3,547,282 to 3,547,422
rpmH
JDDGAC_18625: ysdD - Protein YsdD, at 3,547,652 to 3,547,732
ysdD
JDDGAC_18630: dnaA - chromosomal replication initiator protein DnaA, at 3,548,029 to 3,549,432
dnaA
JDDGAC_18640: dnaN - DNA polymerase III subunit beta, at 3,549,437 to 3,550,537
dnaN
JDDGAC_18645: recF - DNA replication/repair protein RecF, at 3,550,537 to 3,551,610
recF
Group
Condition
JDDGAC
_18620
JDDGAC
_18625
JDDGAC
_18630
JDDGAC
_18640
JDDGAC
_18645
rpmH
ysdD
dnaA
dnaN
recF
phage
WM_K30
N.D.
-0.3
N.D.
N.D.
-0.5
no phage control
Control_ECRC98_WM
N.D.
-0.6
N.D.
N.D.
-0.2
phage
WM_K30
N.D.
-0.4
N.D.
N.D.
-0.3
phage
WM_Bas09
N.D.
-0.4
N.D.
N.D.
-0.2
phage
WM_TP12
N.D.
-0.5
N.D.
N.D.
+0.1
no phage control
Control_ECRC98_WM
N.D.
-0.1
N.D.
N.D.
-0.2
no phage control
Control_ECRC98_WM
N.D.
+0.1
N.D.
N.D.
-0.4
phage
WM_Bas09
N.D.
+0.1
N.D.
N.D.
-0.3
phage
WM_Bas31
N.D.
-0.1
N.D.
N.D.
-0.1
phage
WM_JK45
N.D.
+0.1
N.D.
N.D.
-0.2
no phage control
Control_ECRC98_WM
N.D.
+0.0
N.D.
N.D.
-0.2
phage
WM_JK45
N.D.
+0.2
N.D.
N.D.
-0.2
phage
WM_TP12
N.D.
+0.2
N.D.
N.D.
-0.2
phage
WM_Bas31
N.D.
+0.2
N.D.
N.D.
-0.2
phage
WM_JK32
N.D.
-0.0
N.D.
N.D.
-0.0
phage
WM_JK32
N.D.
-0.1
N.D.
N.D.
+0.1
phage
WM_EV240
N.D.
-0.2
N.D.
N.D.
+1.0
phage
WM_EV240
N.D.
+0.2
N.D.
N.D.
+0.7
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