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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC98
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500 nt
Thr_trna and coaA are separated by 385 nucleotides
coaA and birA are separated by 28 nucleotides
birA and murB overlap by 4 nucleotides
murB and 5S_rrna are separated by 136 nucleotides
JDDGAC_17105: Thr_trna - tRNA-Thr(tgt), at 3,233,496 to 3,233,571
_trna
JDDGAC_17110: coaA - type I pantothenate kinase, at 3,233,957 to 3,234,883
coaA
JDDGAC_17115: birA - bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA, at 3,234,912 to 3,235,877
birA
JDDGAC_17120: murB - UDP-N-acetylmuramate dehydrogenase, at 3,235,874 to 3,236,902
murB
JDDGAC_17125: 5S_rrna - 5S ribosomal RNA, at 3,237,039 to 3,237,154
_rrna
Group
Condition
JDDGAC
_17105
JDDGAC
_17110
JDDGAC
_17115
JDDGAC
_17120
JDDGAC
_17125
Thr_trna
coaA
birA
murB
5S_rrna
phage
WM_Bas09
N.D.
N.D.
N.D.
N.D.
-1.7
phage
WM_K30
N.D.
N.D.
N.D.
N.D.
-1.2
phage
WM_Bas31
N.D.
N.D.
N.D.
N.D.
-1.0
phage
WM_Bas31
N.D.
N.D.
N.D.
N.D.
-0.9
phage
WM_JK32
N.D.
N.D.
N.D.
N.D.
-0.7
phage
WM_TP12
N.D.
N.D.
N.D.
N.D.
-0.7
no phage control
Control_ECRC98_WM
N.D.
N.D.
N.D.
N.D.
-0.6
phage
WM_Bas09
N.D.
N.D.
N.D.
N.D.
-0.6
phage
WM_K30
N.D.
N.D.
N.D.
N.D.
-0.6
phage
WM_JK32
N.D.
N.D.
N.D.
N.D.
-0.5
phage
WM_TP12
N.D.
N.D.
N.D.
N.D.
-0.4
no phage control
Control_ECRC98_WM
N.D.
N.D.
N.D.
N.D.
-0.3
phage
WM_JK45
N.D.
N.D.
N.D.
N.D.
-0.2
phage
WM_JK45
N.D.
N.D.
N.D.
N.D.
-0.1
phage
WM_EV240
N.D.
N.D.
N.D.
N.D.
+0.1
no phage control
Control_ECRC98_WM
N.D.
N.D.
N.D.
N.D.
+0.1
phage
WM_EV240
N.D.
N.D.
N.D.
N.D.
+0.2
no phage control
Control_ECRC98_WM
N.D.
N.D.
N.D.
N.D.
+0.3
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