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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC98
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500 nt
ubiC and espX4 are separated by 222 nucleotides
espX4 and malM are separated by 228 nucleotides
malM and lamB are separated by 150 nucleotides
lamB and malK are separated by 71 nucleotides
JDDGAC_16710: ubiC - chorismate lyase, at 3,150,541 to 3,151,038
ubiC
JDDGAC_16715: espX4 - Type III secretion system effector EspX4, at 3,151,261 to 3,152,841
espX4
JDDGAC_16720: malM - maltose operon protein MalM, at 3,153,070 to 3,153,990
malM
JDDGAC_16725: lamB - maltoporin LamB, at 3,154,141 to 3,155,481
lamB
JDDGAC_16730: malK - maltose/maltodextrin ABC transporter ATP-binding protein MalK, at 3,155,553 to 3,156,668
malK
Group
Condition
JDDGAC
_16710
JDDGAC
_16715
JDDGAC
_16720
JDDGAC
_16725
JDDGAC
_16730
ubiC
espX4
malM
lamB
malK
phage
WM_Bas09
-1.6
+0.2
+0.4
-0.1
+0.0
phage
WM_TP12
-0.2
-0.1
-0.1
-0.1
-0.3
no phage control
Control_ECRC98_WM
-0.7
+0.4
-0.2
-0.2
-0.0
phage
WM_K30
-0.6
-0.1
+0.1
-0.1
+0.0
no phage control
Control_ECRC98_WM
-0.0
-0.2
-0.0
-0.0
+0.0
phage
WM_TP12
+0.0
-0.1
-0.1
-0.1
+0.1
phage
WM_K30
+0.4
+0.2
-0.3
-0.1
-0.2
no phage control
Control_ECRC98_WM
+0.1
+0.2
-0.1
-0.1
-0.0
phage
WM_JK45
+0.1
+0.3
-0.6
+0.1
+0.1
phage
WM_Bas31
-0.5
+0.1
+0.3
+0.0
+0.2
no phage control
Control_ECRC98_WM
+0.2
+0.1
+0.1
-0.1
+0.0
phage
WM_JK45
-0.3
+0.3
-0.0
+0.1
+0.3
phage
WM_JK32
+0.5
-0.1
-0.1
-0.1
+0.3
phage
WM_Bas31
+0.5
-0.2
+0.0
+0.1
+0.3
phage
WM_EV240
-0.6
-0.2
+0.3
+0.5
+0.6
phage
WM_JK32
+0.0
+0.3
+0.0
+0.1
+0.3
phage
WM_EV240
+0.0
-0.0
+0.2
+0.7
-0.0
phage
WM_Bas09
+0.6
+0.4
-0.1
+0.0
-0.0
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