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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC98
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
ddlA and yaiZ are separated by 23 nucleotides
yaiZ and yaiY are separated by 259 nucleotides
yaiY and yaiW are separated by 58 nucleotides
yaiW and sbmA are separated by 12 nucleotides
JDDGAC_12290: ddlA - D-alanine--D-alanine ligase, at 2,264,237 to 2,265,331
ddlA
JDDGAC_12295: yaiZ - Uncharacterized protein YaiZ, at 2,265,355 to 2,265,567
yaiZ
JDDGAC_12300: yaiY - Inner membrane protein YaiY, at 2,265,827 to 2,266,135
yaiY
JDDGAC_12305: yaiW - surface-exposed outer membrane lipoprotein YaiW, at 2,266,194 to 2,267,288
yaiW
JDDGAC_12310: sbmA - peptide antibiotic transporter SbmA, at 2,267,301 to 2,268,521
sbmA
Group
Condition
JDDGAC
_12290
JDDGAC
_12295
JDDGAC
_12300
JDDGAC
_12305
JDDGAC
_12310
ddlA
yaiZ
yaiY
yaiW
sbmA
phage
WM_EV240
+0.1
-0.2
-0.1
-0.2
-0.3
phage
WM_JK45
+0.1
-0.2
-0.1
-0.3
-0.1
phage
WM_EV240
-0.1
+0.4
-0.1
-0.4
-0.3
phage
WM_K30
+0.1
-0.1
-0.1
-0.1
-0.2
phage
WM_TP12
+0.0
+0.2
+0.0
-0.4
-0.1
phage
WM_JK32
-0.1
-0.2
+0.2
-0.1
-0.1
phage
WM_Bas09
-0.1
+0.1
-0.2
-0.1
-0.1
no phage control
Control_ECRC98_WM
+0.1
+0.1
-0.1
-0.4
+0.0
phage
WM_JK45
-0.1
+0.2
-0.0
-0.2
-0.1
no phage control
Control_ECRC98_WM
-0.0
+0.0
+0.1
-0.0
-0.2
phage
WM_Bas09
-0.3
-0.0
+0.6
-0.1
-0.1
phage
WM_TP12
+0.2
+0.3
+0.0
-0.2
-0.1
phage
WM_Bas31
-0.1
+0.0
+0.4
-0.0
-0.1
no phage control
Control_ECRC98_WM
-0.1
+0.2
+0.3
-0.1
-0.1
phage
WM_JK32
-0.0
-0.0
+0.4
-0.0
-0.1
phage
WM_Bas31
+0.2
+0.0
+0.1
-0.1
-0.0
phage
WM_K30
-0.1
+0.2
+0.4
+0.0
-0.2
no phage control
Control_ECRC98_WM
+0.2
+0.2
+0.4
+0.1
+0.1
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