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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC98
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
cusF and ibeB are separated by 23 nucleotides
ibeB and cusR are separated by 156 nucleotides
cusR and cusS overlap by 11 nucleotides
cusS and vgrG are separated by 593 nucleotides
JDDGAC_11340: cusF - Cu(+)/Ag(+) efflux RND transporter periplasmic metallochaperone CusF, at 2,045,239 to 2,045,571
cusF
JDDGAC_11345: ibeB - Cu(+)/Ag(+) efflux RND transporter outer membrane channel CusC, at 2,045,595 to 2,046,977
ibeB
JDDGAC_11350: cusR - copper response regulator transcription factor CusR, at 2,047,134 to 2,047,817
cusR
JDDGAC_11355: cusS - Cu(+)/Ag(+) sensor histidine kinase CusS, at 2,047,807 to 2,049,255
cusS
JDDGAC_11360: vgrG - type VI secretion system tip protein VgrG, at 2,049,849 to 2,051,750
vgrG
Group
Condition
JDDGAC
_11340
JDDGAC
_11345
JDDGAC
_11350
JDDGAC
_11355
JDDGAC
_11360
cusF
ibeB
cusR
cusS
vgrG
no phage control
Control_ECRC98_WM
N.D.
+0.1
-1.1
+0.1
-0.4
phage
WM_JK45
N.D.
+0.2
-1.9
-0.1
+0.5
phage
WM_JK45
N.D.
-0.2
-0.6
+0.1
-0.2
phage
WM_TP12
N.D.
+0.1
-0.9
-0.1
+0.5
phage
WM_EV240
N.D.
-0.4
-1.0
+0.1
+0.9
phage
WM_JK32
N.D.
-0.1
-0.6
-0.0
+0.3
phage
WM_Bas31
N.D.
+0.0
-0.8
+0.1
+0.3
no phage control
Control_ECRC98_WM
N.D.
-0.2
-0.4
+0.0
+0.4
no phage control
Control_ECRC98_WM
N.D.
-0.2
+0.2
-0.0
-0.1
phage
WM_EV240
N.D.
-0.4
+0.3
+0.1
+0.0
phage
WM_JK32
N.D.
+0.1
-0.2
-0.0
+0.1
phage
WM_K30
N.D.
-0.2
-0.2
+0.1
+0.4
phage
WM_Bas09
N.D.
+0.4
-0.3
-0.3
+0.2
phage
WM_Bas09
N.D.
+0.0
-0.0
-0.0
+0.4
no phage control
Control_ECRC98_WM
N.D.
-0.1
+0.1
+0.1
+0.5
phage
WM_TP12
N.D.
+0.2
+0.0
+0.3
+0.3
phage
WM_K30
N.D.
+0.0
+0.3
-0.1
+0.6
phage
WM_Bas31
N.D.
+0.2
+0.3
+0.1
+0.3
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JDDGAC_11350
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