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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC98
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
pxpC and pxpB overlap by 7 nucleotides
pxpB and ybgI are separated by 22 nucleotides
ybgI and dtpD are separated by 270 nucleotides
dtpD and phrB are separated by 149 nucleotides
JDDGAC_10655: pxpC - 5-oxoprolinase subunit PxpC, at 1,903,523 to 1,904,455
pxpC
JDDGAC_10660: pxpB - 5-oxoprolinase subunit PxpB, at 1,904,449 to 1,905,105
pxpB
JDDGAC_10665: ybgI - radiation resistance protein YbgI, at 1,905,128 to 1,905,871
ybgI
JDDGAC_10670: dtpD - dipeptide permease DtpD, at 1,906,142 to 1,907,623
dtpD
JDDGAC_10680: phrB - deoxyribodipyrimidine photo-lyase, at 1,907,773 to 1,909,191
phrB
Group
Condition
JDDGAC
_10655
JDDGAC
_10660
JDDGAC
_10665
JDDGAC
_10670
JDDGAC
_10680
pxpC
pxpB
ybgI
dtpD
phrB
no phage control
Control_ECRC98_WM
-0.2
-0.2
-0.0
-0.0
-0.0
no phage control
Control_ECRC98_WM
+0.0
-0.3
-0.1
+0.1
-0.1
no phage control
Control_ECRC98_WM
-0.2
-0.2
+0.2
-0.0
+0.1
phage
WM_Bas09
-0.3
-0.3
+0.2
+0.1
+0.2
phage
WM_TP12
-0.1
-0.0
+0.2
+0.0
-0.2
phage
WM_EV240
+0.1
+0.2
-0.2
-0.2
+0.2
phage
WM_JK32
-0.3
+0.1
+0.3
+0.1
-0.0
phage
WM_Bas31
+0.2
-0.3
+0.2
-0.0
+0.1
phage
WM_JK45
-0.0
+0.4
+0.1
-0.0
+0.0
phage
WM_JK45
+0.1
-0.1
+0.1
+0.2
+0.1
no phage control
Control_ECRC98_WM
-0.0
-0.1
+0.4
-0.0
+0.3
phage
WM_EV240
-0.1
+0.4
+0.1
-0.0
+0.2
phage
WM_Bas09
-0.0
-0.4
+0.7
+0.2
+0.2
phage
WM_Bas31
-0.1
-0.1
+0.4
+0.1
+0.2
phage
WM_K30
+0.1
-0.1
+0.7
-0.0
+0.1
phage
WM_JK32
+0.1
-0.1
+0.4
+0.3
+0.1
phage
WM_K30
+0.2
+0.4
+0.2
+0.0
-0.0
phage
WM_TP12
+0.2
+0.5
+0.4
-0.1
-0.0
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