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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC98
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
ycaP and ycaO are separated by 129 nucleotides
ycaO and focA are separated by 405 nucleotides
focA and pflB are separated by 54 nucleotides
pflB and ogrK are separated by 318 nucleotides
JDDGAC_09105: ycaP - UPF0702 transmembrane protein YcaP, at 1,607,043 to 1,607,735
ycaP
JDDGAC_09110: ycaO - 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO, at 1,607,865 to 1,609,625
ycaO
JDDGAC_09115: focA - formate transporter FocA, at 1,610,031 to 1,610,888
focA
JDDGAC_09120: pflB - formate C-acetyltransferase, at 1,610,943 to 1,613,225
pflB
JDDGAC_09125: ogrK - prophage transcriptional regulator OgrK, at 1,613,544 to 1,613,762
ogrK
Group
Condition
JDDGAC
_09105
JDDGAC
_09110
JDDGAC
_09115
JDDGAC
_09120
JDDGAC
_09125
ycaP
ycaO
focA
pflB
ogrK
phage
WM_EV240
-0.3
+0.0
-0.1
-0.2
+0.1
phage
WM_TP12
-0.0
-0.1
-0.0
-0.1
+0.3
no phage control
Control_ECRC98_WM
+0.0
-0.2
-0.2
-0.1
+0.5
phage
WM_EV240
-0.4
+0.0
+0.0
-0.4
+1.0
phage
WM_JK32
-0.3
-0.1
+0.1
+0.1
+0.5
no phage control
Control_ECRC98_WM
+0.0
-0.1
-0.1
+0.0
+0.4
phage
WM_K30
-0.1
+0.0
-0.2
-0.1
+1.0
no phage control
Control_ECRC98_WM
+0.0
+0.2
+0.1
-0.0
+0.4
phage
WM_JK45
-0.1
+0.0
-0.1
+0.1
+0.9
phage
WM_JK32
+0.2
-0.1
+0.1
+0.1
+0.6
phage
WM_TP12
-0.1
-0.2
-0.4
+0.2
+1.4
phage
WM_Bas31
+0.2
+0.0
-0.2
+0.1
+0.9
no phage control
Control_ECRC98_WM
+0.1
+0.2
+0.2
+0.2
+0.3
phage
WM_Bas31
+0.0
+0.1
-0.3
+0.1
+1.2
phage
WM_JK45
+0.3
+0.0
-0.2
-0.0
+1.4
phage
WM_Bas09
-0.0
-0.2
+0.2
+0.2
+1.5
phage
WM_Bas09
-0.0
+0.0
-0.0
+0.1
+1.6
phage
WM_K30
+0.1
-0.1
+0.0
+0.0
+1.9
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