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Fitness for 5 genes in
Fusobacterium nucleatum SB010
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500 nt
HUW76_10200 and HUW76_10205 overlap by 7 nucleotides
HUW76_10205 and HUW76_10210 overlap by 17 nucleotides
HUW76_10210 and HUW76_10215 are separated by 240 nucleotides
HUW76_10215 and HUW76_10220 are separated by 195 nucleotides
HUW76_10200: HUW76_10200 - aminotransferase class IV, at 2,136,950 to 2,137,684
_10200
HUW76_10205: HUW76_10205 - aminodeoxychorismate synthase component I, at 2,137,678 to 2,139,030
_10205
HUW76_10210: HUW76_10210 - aminodeoxychorismate/anthranilate synthase component II, at 2,139,014 to 2,139,625
_10210
HUW76_10215: HUW76_10215 - diaminopimelate epimerase, at 2,139,866 to 2,140,663
_10215
HUW76_10220: HUW76_10220 - V-type ATP synthase subunit D, at 2,140,859 to 2,141,494
_10220
Group
Condition
HUW76
_10200
HUW76
_10205
HUW76
_10210
HUW76
_10215
HUW76
_10220
carbon source complex media
RCM (C)
-0.2
+0.2
-0.1
-0.6
+0.0
carbon source
Rhamnogalacturonan I from potato pectic fiber (C)
+0.1
-0.1
-0.4
+0.1
-0.2
time0_glycerolstock
Time0_glycerolstock
+0.0
-0.1
-0.1
-0.3
+0.1
mouse
G1M1_D11
-1.1
+0.4
+0.3
+0.1
+0.1
mouse
G1M1_D7
-0.8
+0.5
+0.1
-0.0
+0.0
mouse
G2M5_D4
-0.8
+0.4
+0.3
+0.0
-0.0
time0_primer_test
Time0_primer_test
+0.1
+0.0
-0.1
-0.0
-0.2
time0_glycerolstock
Time0_glycerolstock
+0.0
+0.1
+0.0
-0.4
+0.1
time0_glycerolstock
Time0_glycerolstock
+0.0
+0.0
+0.0
-0.2
+0.0
time0_primer_test
Time0_primer_test
+0.0
+0.0
-0.1
+0.0
-0.1
time0_glycerolstock
Time0_glycerolstock
+0.2
+0.1
-0.1
-0.2
+0.2
time0_primer_test
Time0_primer_test
+0.1
+0.1
-0.0
-0.0
-0.0
mouse
G1M3_D7
-0.9
+0.4
+0.0
+0.8
-0.1
carbon source
butyrate (C)
+0.0
+0.0
-0.0
+0.5
-0.3
time0_primer_test
Time0_primer_test
+0.2
+0.0
-0.0
+0.1
-0.1
mouse
G1M1_D4
-0.5
+0.3
+0.2
+0.6
-0.2
mouse
G1M1_D9
-0.9
+0.5
+0.1
+0.4
+0.3
mouse
G1M1_D3
-0.1
+0.5
+0.3
+0.1
+0.0
mouse
G1M3_D4
-0.4
+0.6
+0.3
+0.6
-0.0
mouse
G1M3_D3
-0.2
+0.4
+0.5
+0.5
-0.1
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