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Cofit
Protein
Homologs
Fitness for 5 genes in
Fusobacterium nucleatum SB010
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500 nt
HUW76_08555 and HUW76_08560 overlap by 26 nucleotides
HUW76_08560 and HUW76_08565 overlap by 17 nucleotides
HUW76_08565 and HUW76_08570 are separated by 5 nucleotides
HUW76_08570 and HUW76_08575 are separated by 215 nucleotides
HUW76_08555: HUW76_08555 - ComF family protein, at 1,790,500 to 1,791,147
_08555
HUW76_08560: HUW76_08560 - hypothetical protein, at 1,791,122 to 1,791,349
_08560
HUW76_08565: HUW76_08565 - YraN family protein, at 1,791,333 to 1,791,692
_08565
HUW76_08570: HUW76_08570 - ribonuclease HII, at 1,791,698 to 1,792,330
_08570
HUW76_08575: HUW76_08575 - RluA family pseudouridine synthase, at 1,792,546 to 1,793,532
_08575
Group
Condition
HUW76
_08555
HUW76
_08560
HUW76
_08565
HUW76
_08570
HUW76
_08575
mouse
G1M1_D11
-3.2
-3.1
-2.0
-1.4
-0.6
mouse
G1M1_D9
-2.9
-3.7
-1.5
-1.2
+0.1
mouse
G1M1_D7
-2.9
-2.4
-0.9
-0.8
+0.8
mouse
G1M3_D7
-3.6
-0.5
-1.3
-0.6
+2.6
carbon source complex media
RCM (C)
-0.3
+0.0
+0.2
-0.1
-2.5
carbon source
butyrate (C)
-0.3
-1.4
-0.4
+0.2
-0.5
mouse
G2M5_D4
-3.4
+0.0
-2.5
-0.0
+4.8
time0_primer_test
Time0_primer_test
-0.2
+0.3
+0.0
+0.2
+0.3
time0_primer_test
Time0_primer_test
-0.2
+0.3
+0.0
+0.2
+0.3
time0_primer_test
Time0_primer_test
-0.2
+0.4
+0.2
+0.1
+0.3
mouse
G1M3_D4
-1.8
-0.7
-0.2
-0.1
+3.9
time0_primer_test
Time0_primer_test
-0.2
+0.6
+0.2
+0.2
+0.4
time0_glycerolstock
Time0_glycerolstock
-0.1
-0.1
+0.2
+0.4
+0.8
carbon source
Rhamnogalacturonan I from potato pectic fiber (C)
+0.2
+0.9
-0.1
+0.2
+0.1
time0_glycerolstock
Time0_glycerolstock
+0.0
-0.0
+0.0
+0.4
+0.8
time0_glycerolstock
Time0_glycerolstock
+0.2
+0.4
+0.1
+0.2
+0.7
time0_glycerolstock
Time0_glycerolstock
-0.0
+0.3
+0.4
+0.4
+0.7
mouse
G1M1_D4
-1.4
-0.3
-0.0
-0.0
+4.0
mouse
G1M1_D3
-0.8
+0.5
+0.2
-0.0
+2.9
mouse
G1M3_D3
-1.3
-0.0
+0.4
+0.0
+4.1
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