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Fitness for 5 genes in
Fusobacterium nucleatum SB010
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500 nt
HUW76_07560 and HUW76_07565 are separated by 26 nucleotides
HUW76_07565 and HUW76_07570 are separated by 128 nucleotides
HUW76_07570 and HUW76_07575 are separated by 49 nucleotides
HUW76_07575 and HUW76_07580 are separated by 401 nucleotides
HUW76_07560: HUW76_07560 - TonB-dependent receptor, at 1,581,100 to 1,583,349
_07560
HUW76_07565: HUW76_07565 - autotransporter domain-containing protein, at 1,583,376 to 1,587,974
_07565
HUW76_07570: HUW76_07570 - acetyl-CoA C-acetyltransferase, at 1,588,103 to 1,589,311
_07570
HUW76_07575: HUW76_07575 - 3-oxoacyl-[acyl-carrier-protein] reductase, at 1,589,361 to 1,590,080
_07575
HUW76_07580: HUW76_07580 - HrgC protein, at 1,590,482 to 1,590,769
_07580
Group
Condition
HUW76
_07560
HUW76
_07565
HUW76
_07570
HUW76
_07575
HUW76
_07580
mouse
G1M1_D3
+0.3
+0.2
-6.6
N.D.
-0.2
mouse
G1M1_D7
+0.4
+0.2
-5.4
N.D.
-0.3
mouse
G1M1_D9
+0.5
+0.2
-4.8
N.D.
-0.1
mouse
G1M3_D3
+0.6
+0.3
-4.2
N.D.
-0.4
mouse
G1M3_D4
+0.8
+0.3
-3.5
N.D.
-0.9
mouse
G1M1_D4
+0.8
+0.4
-3.6
N.D.
-0.8
carbon source complex media
RCM (C)
+0.1
-0.1
-2.8
N.D.
+0.0
mouse
G1M1_D11
+0.6
+0.3
-3.4
N.D.
+0.4
mouse
G1M3_D7
+0.6
+0.3
-2.1
N.D.
-0.8
mouse
G2M5_D4
+1.0
+0.4
-2.3
N.D.
-0.9
carbon source
butyrate (C)
+0.2
-0.2
-0.7
N.D.
-0.0
time0_primer_test
Time0_primer_test
-0.0
-0.0
+0.0
N.D.
-0.1
time0_glycerolstock
Time0_glycerolstock
+0.0
-0.1
+0.1
N.D.
-0.2
time0_primer_test
Time0_primer_test
+0.1
-0.1
+0.0
N.D.
-0.1
carbon source
Rhamnogalacturonan I from potato pectic fiber (C)
+0.2
-0.0
+0.2
N.D.
-0.4
time0_glycerolstock
Time0_glycerolstock
+0.0
-0.1
+0.2
N.D.
-0.2
time0_primer_test
Time0_primer_test
+0.0
-0.0
+0.0
N.D.
-0.0
time0_glycerolstock
Time0_glycerolstock
+0.1
-0.0
+0.2
N.D.
-0.2
time0_primer_test
Time0_primer_test
+0.0
-0.1
+0.1
N.D.
-0.0
time0_glycerolstock
Time0_glycerolstock
+0.0
-0.0
+0.2
N.D.
-0.1
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